Strain Fitness in Shewanella sp. ANA-3 around Shewana3_2672

Experiment: Thymidine (C)

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntShewana3_2670 and Shewana3_2671 overlap by 8 nucleotidesShewana3_2671 and Shewana3_2672 are separated by 426 nucleotidesShewana3_2672 and Shewana3_2673 are separated by 13 nucleotides Shewana3_2670: Shewana3_2670 - ferrous iron transport protein B (RefSeq), at 3,187,357 to 3,189,651 _2670 Shewana3_2671: Shewana3_2671 - FeoA family protein (RefSeq), at 3,189,644 to 3,189,883 _2671 Shewana3_2672: Shewana3_2672 - cytochrome C family protein (RefSeq), at 3,190,310 to 3,191,275 _2672 Shewana3_2673: Shewana3_2673 - outer membrane protein, putative (RefSeq), at 3,191,289 to 3,193,427 _2673 Position (kb) 3190 3191 3192Strain fitness (log2 ratio) -1 0 1 2at 3190.376 kb on + strandat 3190.591 kb on + strand, within Shewana3_2672at 3190.632 kb on - strand, within Shewana3_2672at 3191.075 kb on + strand, within Shewana3_2672at 3191.233 kb on - strandat 3191.238 kb on + strandat 3191.238 kb on + strandat 3191.430 kb on + strandat 3191.494 kb on + strandat 3191.662 kb on - strand, within Shewana3_2673at 3191.889 kb on + strand, within Shewana3_2673at 3191.897 kb on - strand, within Shewana3_2673at 3191.945 kb on + strand, within Shewana3_2673at 3191.953 kb on - strand, within Shewana3_2673at 3191.966 kb on - strand, within Shewana3_2673at 3191.981 kb on + strand, within Shewana3_2673at 3192.032 kb on - strand, within Shewana3_2673at 3192.117 kb on + strand, within Shewana3_2673

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Per-strain Table

Position Strand Gene LocusTag Fraction Thymidine (C)
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3,190,376 + +1.5
3,190,591 + Shewana3_2672 0.29 +0.4
3,190,632 - Shewana3_2672 0.33 +1.2
3,191,075 + Shewana3_2672 0.79 +2.3
3,191,233 - -0.2
3,191,238 + +0.2
3,191,238 + -0.1
3,191,430 + -0.2
3,191,494 + +0.9
3,191,662 - Shewana3_2673 0.17 -0.9
3,191,889 + Shewana3_2673 0.28 -0.6
3,191,897 - Shewana3_2673 0.28 +0.2
3,191,945 + Shewana3_2673 0.31 +0.8
3,191,953 - Shewana3_2673 0.31 -0.4
3,191,966 - Shewana3_2673 0.32 -0.8
3,191,981 + Shewana3_2673 0.32 +0.7
3,192,032 - Shewana3_2673 0.35 +0.1
3,192,117 + Shewana3_2673 0.39 +1.4

Or see this region's nucleotide sequence