Experiment: Thymidine (C)
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt Shewana3_2670 and Shewana3_2671 overlap by 8 nucleotides Shewana3_2671 and Shewana3_2672 are separated by 426 nucleotides Shewana3_2672 and Shewana3_2673 are separated by 13 nucleotides
Shewana3_2670: Shewana3_2670 - ferrous iron transport protein B (RefSeq), at 3,187,357 to 3,189,651
_2670
Shewana3_2671: Shewana3_2671 - FeoA family protein (RefSeq), at 3,189,644 to 3,189,883
_2671
Shewana3_2672: Shewana3_2672 - cytochrome C family protein (RefSeq), at 3,190,310 to 3,191,275
_2672
Shewana3_2673: Shewana3_2673 - outer membrane protein, putative (RefSeq), at 3,191,289 to 3,193,427
_2673
Position (kb)
3190
3191
3192 Strain fitness (log2 ratio)
-1
0
1
2 at 3190.376 kb on + strand at 3190.591 kb on + strand, within Shewana3_2672 at 3190.632 kb on - strand, within Shewana3_2672 at 3191.075 kb on + strand, within Shewana3_2672 at 3191.233 kb on - strand at 3191.238 kb on + strand at 3191.238 kb on + strand at 3191.430 kb on + strand at 3191.494 kb on + strand at 3191.662 kb on - strand, within Shewana3_2673 at 3191.889 kb on + strand, within Shewana3_2673 at 3191.897 kb on - strand, within Shewana3_2673 at 3191.945 kb on + strand, within Shewana3_2673 at 3191.953 kb on - strand, within Shewana3_2673 at 3191.966 kb on - strand, within Shewana3_2673 at 3191.981 kb on + strand, within Shewana3_2673 at 3192.032 kb on - strand, within Shewana3_2673 at 3192.117 kb on + strand, within Shewana3_2673
Per-strain Table
Position Strand Gene LocusTag Fraction Thymidine (C) remove 3,190,376 + +1.5 3,190,591 + Shewana3_2672 0.29 +0.4 3,190,632 - Shewana3_2672 0.33 +1.2 3,191,075 + Shewana3_2672 0.79 +2.3 3,191,233 - -0.2 3,191,238 + +0.2 3,191,238 + -0.1 3,191,430 + -0.2 3,191,494 + +0.9 3,191,662 - Shewana3_2673 0.17 -0.9 3,191,889 + Shewana3_2673 0.28 -0.6 3,191,897 - Shewana3_2673 0.28 +0.2 3,191,945 + Shewana3_2673 0.31 +0.8 3,191,953 - Shewana3_2673 0.31 -0.4 3,191,966 - Shewana3_2673 0.32 -0.8 3,191,981 + Shewana3_2673 0.32 +0.7 3,192,032 - Shewana3_2673 0.35 +0.1 3,192,117 + Shewana3_2673 0.39 +1.4
Or see this region's nucleotide sequence