Experiment: Thymidine (C)
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt Shewana3_2669 and Shewana3_2670 are separated by 183 nucleotides Shewana3_2670 and Shewana3_2671 overlap by 8 nucleotides Shewana3_2671 and Shewana3_2672 are separated by 426 nucleotides
Shewana3_2669: Shewana3_2669 - glutaminyl-tRNA synthetase (RefSeq), at 3,185,503 to 3,187,173
_2669
Shewana3_2670: Shewana3_2670 - ferrous iron transport protein B (RefSeq), at 3,187,357 to 3,189,651
_2670
Shewana3_2671: Shewana3_2671 - FeoA family protein (RefSeq), at 3,189,644 to 3,189,883
_2671
Shewana3_2672: Shewana3_2672 - cytochrome C family protein (RefSeq), at 3,190,310 to 3,191,275
_2672
Position (kb) 3187
3188
3189
3190 Strain fitness (log2 ratio) -1
0
1
2 at 3187.260 kb on - strand at 3187.863 kb on - strand, within Shewana3_2670 at 3188.454 kb on - strand, within Shewana3_2670 at 3188.587 kb on - strand, within Shewana3_2670 at 3189.217 kb on + strand, within Shewana3_2670 at 3190.376 kb on + strand at 3190.591 kb on + strand, within Shewana3_2672 at 3190.632 kb on - strand, within Shewana3_2672
Per-strain Table
Position Strand Gene LocusTag Fraction Thymidine (C) remove 3,187,260 - -1.0 3,187,863 - Shewana3_2670 0.22 +0.2 3,188,454 - Shewana3_2670 0.48 +0.2 3,188,587 - Shewana3_2670 0.54 +2.5 3,189,217 + Shewana3_2670 0.81 +0.2 3,190,376 + +1.5 3,190,591 + Shewana3_2672 0.29 +0.4 3,190,632 - Shewana3_2672 0.33 +1.2
Or see this region's nucleotide sequence