Experiment: Thymidine (C)
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt Shewana3_2341 and Shewana3_2342 are separated by 364 nucleotides Shewana3_2342 and Shewana3_2343 are separated by 22 nucleotides
Shewana3_2341: Shewana3_2341 - molybdopterin oxidoreductase (RefSeq), at 2,815,232 to 2,817,796
_2341
Shewana3_2342: Shewana3_2342 - arsenical resistance operon trans-acting repressor ArsD (RefSeq), at 2,818,161 to 2,818,523
_2342
Shewana3_2343: Shewana3_2343 - arsenite-activated ATPase ArsA (RefSeq), at 2,818,546 to 2,820,312
_2343
Position (kb)
2818
2819 Strain fitness (log2 ratio)
-2
-1
0
1 at 2817.524 kb on - strand, within Shewana3_2341 at 2817.576 kb on + strand at 2817.648 kb on - strand at 2817.701 kb on + strand at 2817.742 kb on + strand at 2817.755 kb on + strand at 2817.764 kb on - strand at 2817.988 kb on + strand at 2818.209 kb on - strand, within Shewana3_2342 at 2818.287 kb on - strand, within Shewana3_2342 at 2818.373 kb on + strand, within Shewana3_2342 at 2818.373 kb on + strand, within Shewana3_2342 at 2818.668 kb on + strand at 2818.721 kb on - strand at 2818.800 kb on - strand, within Shewana3_2343 at 2818.856 kb on + strand, within Shewana3_2343 at 2818.991 kb on - strand, within Shewana3_2343 at 2819.109 kb on + strand, within Shewana3_2343 at 2819.114 kb on + strand, within Shewana3_2343 at 2819.117 kb on - strand, within Shewana3_2343
Per-strain Table
Position Strand Gene LocusTag Fraction Thymidine (C) remove 2,817,524 - Shewana3_2341 0.89 -0.5 2,817,576 + -0.6 2,817,648 - +1.0 2,817,701 + -1.1 2,817,742 + -0.1 2,817,755 + +1.1 2,817,764 - -0.8 2,817,988 + +0.0 2,818,209 - Shewana3_2342 0.13 -2.6 2,818,287 - Shewana3_2342 0.35 -0.9 2,818,373 + Shewana3_2342 0.58 -0.5 2,818,373 + Shewana3_2342 0.58 -0.7 2,818,668 + +1.1 2,818,721 - +0.7 2,818,800 - Shewana3_2343 0.14 +0.9 2,818,856 + Shewana3_2343 0.18 -0.4 2,818,991 - Shewana3_2343 0.25 -0.8 2,819,109 + Shewana3_2343 0.32 +0.0 2,819,114 + Shewana3_2343 0.32 -1.1 2,819,117 - Shewana3_2343 0.32 -0.6
Or see this region's nucleotide sequence