Strain Fitness in Shewanella sp. ANA-3 around Shewana3_2315

Experiment: Thymidine (C)

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntShewana3_2314 and Shewana3_2315 are separated by 115 nucleotidesShewana3_2315 and Shewana3_2316 are separated by 72 nucleotides Shewana3_2314: Shewana3_2314 - alpha amylase, catalytic region (RefSeq), at 2,785,613 to 2,787,742 _2314 Shewana3_2315: Shewana3_2315 - glyoxalase/bleomycin resistance protein/dioxygenase (RefSeq), at 2,787,858 to 2,788,286 _2315 Shewana3_2316: Shewana3_2316 - hypothetical protein (RefSeq), at 2,788,359 to 2,788,658 _2316 Position (kb) 2787 2788 2789Strain fitness (log2 ratio) -1 0 1at 2786.902 kb on + strand, within Shewana3_2314at 2787.073 kb on - strand, within Shewana3_2314at 2787.780 kb on + strandat 2787.969 kb on - strand, within Shewana3_2315at 2787.999 kb on - strand, within Shewana3_2315at 2788.224 kb on + strand, within Shewana3_2315at 2788.372 kb on + strandat 2788.372 kb on + strandat 2788.380 kb on - strandat 2788.442 kb on + strand, within Shewana3_2316

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Per-strain Table

Position Strand Gene LocusTag Fraction Thymidine (C)
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2,786,902 + Shewana3_2314 0.61 -1.3
2,787,073 - Shewana3_2314 0.69 +1.1
2,787,780 + +0.1
2,787,969 - Shewana3_2315 0.26 -0.7
2,787,999 - Shewana3_2315 0.33 -1.1
2,788,224 + Shewana3_2315 0.85 +0.4
2,788,372 + +1.4
2,788,372 + -1.1
2,788,380 - -0.8
2,788,442 + Shewana3_2316 0.28 +1.1

Or see this region's nucleotide sequence