Experiment: Thymidine (C)
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt Shewana3_2119 and Shewana3_2120 are separated by 317 nucleotides Shewana3_2120 and Shewana3_2121 are separated by 164 nucleotides
Shewana3_2119: Shewana3_2119 - mannosyl-glycoprotein endo-beta-N-acetylglucosamidase (RefSeq), at 2,542,351 to 2,543,163
_2119
Shewana3_2120: Shewana3_2120 - hypothetical protein (RefSeq), at 2,543,481 to 2,544,404
_2120
Shewana3_2121: Shewana3_2121 - aromatic amino acid aminotransferase (RefSeq), at 2,544,569 to 2,545,762
_2121
Position (kb)
2543
2544
2545 Strain fitness (log2 ratio)
-1
0
1 at 2542.568 kb on - strand, within Shewana3_2119 at 2542.601 kb on + strand, within Shewana3_2119 at 2542.774 kb on + strand, within Shewana3_2119 at 2542.846 kb on + strand, within Shewana3_2119 at 2543.124 kb on - strand at 2543.129 kb on - strand at 2543.285 kb on - strand at 2543.640 kb on + strand, within Shewana3_2120 at 2543.645 kb on + strand, within Shewana3_2120 at 2543.803 kb on + strand, within Shewana3_2120 at 2544.258 kb on - strand, within Shewana3_2120 at 2544.333 kb on + strand at 2545.073 kb on + strand, within Shewana3_2121 at 2545.081 kb on - strand, within Shewana3_2121 at 2545.137 kb on + strand, within Shewana3_2121 at 2545.403 kb on - strand, within Shewana3_2121
Per-strain Table
Position Strand Gene LocusTag Fraction Thymidine (C) remove 2,542,568 - Shewana3_2119 0.27 -0.8 2,542,601 + Shewana3_2119 0.31 -0.2 2,542,774 + Shewana3_2119 0.52 -1.2 2,542,846 + Shewana3_2119 0.61 -0.9 2,543,124 - -0.8 2,543,129 - +0.8 2,543,285 - -0.0 2,543,640 + Shewana3_2120 0.17 +1.0 2,543,645 + Shewana3_2120 0.18 -0.0 2,543,803 + Shewana3_2120 0.35 +0.9 2,544,258 - Shewana3_2120 0.84 +1.4 2,544,333 + +0.4 2,545,073 + Shewana3_2121 0.42 -0.4 2,545,081 - Shewana3_2121 0.43 -0.3 2,545,137 + Shewana3_2121 0.48 +0.5 2,545,403 - Shewana3_2121 0.70 -0.4
Or see this region's nucleotide sequence