Strain Fitness in Shewanella sp. ANA-3 around Shewana3_1758

Experiment: Thymidine (C)

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntaat and Shewana3_1757 are separated by 81 nucleotidesShewana3_1757 and Shewana3_1758 are separated by 60 nucleotidesShewana3_1758 and Shewana3_1759 are separated by 109 nucleotides Shewana3_1756: aat - leucyl/phenylalanyl-tRNA--protein transferase (RefSeq), at 2,070,388 to 2,071,098 aat Shewana3_1757: Shewana3_1757 - 17 kDa surface antigen (RefSeq), at 2,071,180 to 2,071,623 _1757 Shewana3_1758: Shewana3_1758 - hypothetical protein (RefSeq), at 2,071,684 to 2,072,436 _1758 Shewana3_1759: Shewana3_1759 - hypothetical protein (RefSeq), at 2,072,546 to 2,073,502 _1759 Position (kb) 2071 2072 2073Strain fitness (log2 ratio) -2 -1 0 1 2 3at 2071.334 kb on + strand, within Shewana3_1757at 2071.398 kb on - strand, within Shewana3_1757at 2071.435 kb on - strand, within Shewana3_1757at 2071.780 kb on + strand, within Shewana3_1758at 2071.795 kb on + strand, within Shewana3_1758at 2072.228 kb on - strand, within Shewana3_1758at 2072.421 kb on + strandat 2072.439 kb on - strandat 2072.485 kb on + strandat 2072.493 kb on - strandat 2072.544 kb on + strandat 2072.544 kb on + strandat 2072.544 kb on + strandat 2072.562 kb on - strandat 2072.599 kb on - strandat 2072.657 kb on + strand, within Shewana3_1759at 2072.725 kb on - strand, within Shewana3_1759at 2072.785 kb on + strand, within Shewana3_1759at 2072.894 kb on + strand, within Shewana3_1759at 2073.036 kb on - strand, within Shewana3_1759at 2073.172 kb on + strand, within Shewana3_1759at 2073.328 kb on - strand, within Shewana3_1759at 2073.427 kb on + strand

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Per-strain Table

Position Strand Gene LocusTag Fraction Thymidine (C)
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2,071,334 + Shewana3_1757 0.35 -0.7
2,071,398 - Shewana3_1757 0.49 -0.1
2,071,435 - Shewana3_1757 0.57 +0.3
2,071,780 + Shewana3_1758 0.13 -0.4
2,071,795 + Shewana3_1758 0.15 -1.1
2,072,228 - Shewana3_1758 0.72 -2.6
2,072,421 + +0.3
2,072,439 - -2.6
2,072,485 + +0.1
2,072,493 - -0.7
2,072,544 + +0.2
2,072,544 + -0.9
2,072,544 + -1.4
2,072,562 - -0.2
2,072,599 - +0.4
2,072,657 + Shewana3_1759 0.12 +0.2
2,072,725 - Shewana3_1759 0.19 +0.2
2,072,785 + Shewana3_1759 0.25 -0.8
2,072,894 + Shewana3_1759 0.36 +0.5
2,073,036 - Shewana3_1759 0.51 +0.0
2,073,172 + Shewana3_1759 0.65 +2.8
2,073,328 - Shewana3_1759 0.82 -0.3
2,073,427 + -0.5

Or see this region's nucleotide sequence