Strain Fitness in Shewanella sp. ANA-3 around Shewana3_1744

Experiment: Thymidine (C)

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntShewana3_1742 and Shewana3_1743 are separated by 279 nucleotidesShewana3_1743 and Shewana3_1744 are separated by 96 nucleotidesShewana3_1744 and Shewana3_1745 are separated by 126 nucleotides Shewana3_1742: Shewana3_1742 - leucine dehydrogenase (RefSeq), at 2,055,662 to 2,056,696 _1742 Shewana3_1743: Shewana3_1743 - hypothetical protein (RefSeq), at 2,056,976 to 2,057,434 _1743 Shewana3_1744: Shewana3_1744 - cupin 4 family protein (RefSeq), at 2,057,531 to 2,058,670 _1744 Shewana3_1745: Shewana3_1745 - adenylosuccinate lyase (RefSeq), at 2,058,797 to 2,060,167 _1745 Position (kb) 2057 2058 2059Strain fitness (log2 ratio) -2 -1 0 1 2 3 4at 2056.707 kb on + strandat 2057.016 kb on + strandat 2057.511 kb on + strandat 2057.528 kb on + strandat 2057.536 kb on - strandat 2057.822 kb on + strand, within Shewana3_1744at 2057.934 kb on - strand, within Shewana3_1744at 2057.987 kb on + strand, within Shewana3_1744at 2057.996 kb on - strand, within Shewana3_1744at 2058.094 kb on + strand, within Shewana3_1744at 2058.104 kb on - strand, within Shewana3_1744at 2058.246 kb on - strand, within Shewana3_1744at 2058.485 kb on - strand, within Shewana3_1744at 2058.559 kb on + strand

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Per-strain Table

Position Strand Gene LocusTag Fraction Thymidine (C)
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2,056,707 + +0.3
2,057,016 + -0.3
2,057,511 + -2.0
2,057,528 + +1.0
2,057,536 - -1.0
2,057,822 + Shewana3_1744 0.26 -0.2
2,057,934 - Shewana3_1744 0.35 +0.2
2,057,987 + Shewana3_1744 0.40 +4.2
2,057,996 - Shewana3_1744 0.41 -0.5
2,058,094 + Shewana3_1744 0.49 +1.2
2,058,104 - Shewana3_1744 0.50 +0.0
2,058,246 - Shewana3_1744 0.63 -0.3
2,058,485 - Shewana3_1744 0.84 +0.9
2,058,559 + +1.2

Or see this region's nucleotide sequence