Strain Fitness in Shewanella sp. ANA-3 around Shewana3_1546

Experiment: Thymidine (C)

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntShewana3_1545 and Shewana3_1546 are separated by 130 nucleotidesShewana3_1546 and Shewana3_1547 are separated by 321 nucleotidesShewana3_1547 and Shewana3_1548 are separated by 132 nucleotides Shewana3_1545: Shewana3_1545 - hypothetical protein (RefSeq), at 1,802,402 to 1,803,313 _1545 Shewana3_1546: Shewana3_1546 - hypothetical protein (RefSeq), at 1,803,444 to 1,803,668 _1546 Shewana3_1547: Shewana3_1547 - hypothetical protein (RefSeq), at 1,803,990 to 1,804,082 _1547 Shewana3_1548: Shewana3_1548 - hypothetical protein (RefSeq), at 1,804,215 to 1,804,649 _1548 Position (kb) 1803 1804Strain fitness (log2 ratio) -1 0 1at 1802.541 kb on + strand, within Shewana3_1545at 1802.826 kb on - strand, within Shewana3_1545at 1803.018 kb on + strand, within Shewana3_1545at 1803.026 kb on - strand, within Shewana3_1545at 1803.300 kb on + strandat 1803.428 kb on + strandat 1803.451 kb on - strandat 1803.560 kb on - strand, within Shewana3_1546at 1803.891 kb on + strandat 1803.899 kb on - strandat 1803.940 kb on + strandat 1804.311 kb on - strand, within Shewana3_1548at 1804.319 kb on + strand, within Shewana3_1548at 1804.495 kb on + strand, within Shewana3_1548

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Per-strain Table

Position Strand Gene LocusTag Fraction Thymidine (C)
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1,802,541 + Shewana3_1545 0.15 -0.2
1,802,826 - Shewana3_1545 0.46 +1.5
1,803,018 + Shewana3_1545 0.68 -0.1
1,803,026 - Shewana3_1545 0.68 +1.0
1,803,300 + -0.5
1,803,428 + +0.9
1,803,451 - -0.6
1,803,560 - Shewana3_1546 0.52 -0.6
1,803,891 + -0.4
1,803,899 - -1.6
1,803,940 + +0.3
1,804,311 - Shewana3_1548 0.22 +0.7
1,804,319 + Shewana3_1548 0.24 -0.2
1,804,495 + Shewana3_1548 0.64 +0.4

Or see this region's nucleotide sequence