Experiment: Thymidine (C)
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt Shewana3_0573 and Shewana3_0574 are separated by 238 nucleotides Shewana3_0574 and Shewana3_0575 are separated by 402 nucleotides
Shewana3_0573: Shewana3_0573 - hypothetical protein (RefSeq), at 665,732 to 666,691
_0573
Shewana3_0574: Shewana3_0574 - ATP-dependent helicase HepA (RefSeq), at 666,930 to 669,836
_0574
Shewana3_0575: Shewana3_0575 - PhoH family protein (RefSeq), at 670,239 to 671,633
_0575
Position (kb) 666
667
668
669
670 Strain fitness (log2 ratio) -2
-1
0
1
2 at 666.221 kb on + strand, within Shewana3_0573 at 666.229 kb on - strand, within Shewana3_0573 at 666.304 kb on + strand, within Shewana3_0573 at 666.312 kb on - strand, within Shewana3_0573 at 666.437 kb on + strand, within Shewana3_0573 at 666.437 kb on + strand, within Shewana3_0573 at 666.581 kb on - strand, within Shewana3_0573 at 666.670 kb on - strand at 666.696 kb on - strand at 666.815 kb on - strand at 666.837 kb on - strand at 666.927 kb on + strand at 666.935 kb on - strand at 667.477 kb on - strand, within Shewana3_0574 at 667.478 kb on - strand, within Shewana3_0574 at 667.694 kb on + strand, within Shewana3_0574 at 667.711 kb on - strand, within Shewana3_0574 at 667.913 kb on - strand, within Shewana3_0574 at 667.913 kb on - strand, within Shewana3_0574 at 667.937 kb on - strand, within Shewana3_0574 at 668.104 kb on - strand, within Shewana3_0574 at 668.129 kb on - strand, within Shewana3_0574 at 668.378 kb on + strand, within Shewana3_0574 at 668.458 kb on - strand, within Shewana3_0574 at 668.460 kb on - strand, within Shewana3_0574 at 668.507 kb on + strand, within Shewana3_0574 at 668.712 kb on + strand, within Shewana3_0574 at 668.924 kb on + strand, within Shewana3_0574 at 668.972 kb on - strand, within Shewana3_0574 at 669.175 kb on - strand, within Shewana3_0574 at 669.257 kb on + strand, within Shewana3_0574 at 669.270 kb on + strand, within Shewana3_0574 at 669.374 kb on + strand, within Shewana3_0574 at 669.633 kb on + strand at 669.684 kb on + strand at 669.684 kb on + strand at 669.684 kb on + strand at 669.692 kb on - strand at 669.717 kb on + strand at 669.743 kb on - strand at 670.021 kb on + strand at 670.021 kb on + strand at 670.031 kb on + strand at 670.039 kb on - strand at 670.039 kb on - strand at 670.226 kb on + strand at 670.279 kb on - strand at 670.313 kb on - strand at 670.571 kb on + strand, within Shewana3_0575 at 670.636 kb on + strand, within Shewana3_0575
Per-strain Table
Position Strand Gene LocusTag Fraction Thymidine (C) remove 666,221 + Shewana3_0573 0.51 -0.6 666,229 - Shewana3_0573 0.52 -0.8 666,304 + Shewana3_0573 0.60 +0.3 666,312 - Shewana3_0573 0.60 +1.3 666,437 + Shewana3_0573 0.73 -0.2 666,437 + Shewana3_0573 0.73 +1.9 666,581 - Shewana3_0573 0.88 +1.3 666,670 - +0.4 666,696 - -0.5 666,815 - +0.2 666,837 - -0.1 666,927 + +1.7 666,935 - +1.2 667,477 - Shewana3_0574 0.19 +0.0 667,478 - Shewana3_0574 0.19 +1.1 667,694 + Shewana3_0574 0.26 +0.7 667,711 - Shewana3_0574 0.27 +1.5 667,913 - Shewana3_0574 0.34 -0.3 667,913 - Shewana3_0574 0.34 -0.9 667,937 - Shewana3_0574 0.35 +0.1 668,104 - Shewana3_0574 0.40 +0.9 668,129 - Shewana3_0574 0.41 +1.1 668,378 + Shewana3_0574 0.50 +1.7 668,458 - Shewana3_0574 0.53 +0.2 668,460 - Shewana3_0574 0.53 +0.7 668,507 + Shewana3_0574 0.54 +1.5 668,712 + Shewana3_0574 0.61 -0.6 668,924 + Shewana3_0574 0.69 +0.5 668,972 - Shewana3_0574 0.70 +0.1 669,175 - Shewana3_0574 0.77 +1.2 669,257 + Shewana3_0574 0.80 +0.1 669,270 + Shewana3_0574 0.80 -1.9 669,374 + Shewana3_0574 0.84 +1.4 669,633 + +0.4 669,684 + +1.8 669,684 + -0.3 669,684 + +1.0 669,692 - +0.5 669,717 + +0.2 669,743 - +0.4 670,021 + -0.1 670,021 + -0.6 670,031 + -0.5 670,039 - -0.9 670,039 - +0.5 670,226 + +0.9 670,279 - +0.5 670,313 - -0.5 670,571 + Shewana3_0575 0.24 -2.1 670,636 + Shewana3_0575 0.28 -0.4
Or see this region's nucleotide sequence