Experiment: Thymidine (C)
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt Shewana3_0504 and fre are separated by 267 nucleotides
Shewana3_0504: Shewana3_0504 - hypothetical protein (RefSeq), at 595,234 to 596,148
_0504
Shewana3_0505: fre - FMN reductase (RefSeq), at 596,416 to 597,114
fre
Position (kb) 595
596
597 Strain fitness (log2 ratio) -2
-1
0
1
2
3
4 at 594.299 kb on + strand at 594.301 kb on + strand at 594.307 kb on - strand at 594.328 kb on - strand at 594.355 kb on + strand at 594.375 kb on + strand at 594.474 kb on + strand at 594.474 kb on + strand at 594.474 kb on + strand at 594.474 kb on + strand at 594.482 kb on - strand at 594.543 kb on + strand at 594.543 kb on + strand at 594.543 kb on + strand at 594.551 kb on - strand at 594.559 kb on + strand at 594.610 kb on + strand at 594.619 kb on - strand at 594.629 kb on + strand at 594.651 kb on - strand at 594.651 kb on - strand at 594.683 kb on + strand at 594.688 kb on + strand at 594.707 kb on + strand at 594.708 kb on + strand at 594.708 kb on + strand at 594.716 kb on - strand at 594.718 kb on + strand at 594.724 kb on + strand at 594.724 kb on + strand at 594.724 kb on + strand at 594.732 kb on - strand at 594.732 kb on - strand at 594.732 kb on - strand at 594.732 kb on - strand at 594.732 kb on - strand at 594.732 kb on - strand at 594.744 kb on + strand at 594.752 kb on - strand at 594.795 kb on + strand at 594.803 kb on - strand at 594.811 kb on - strand at 594.813 kb on - strand at 594.820 kb on + strand at 594.855 kb on + strand at 594.913 kb on + strand at 594.913 kb on + strand at 594.913 kb on + strand at 594.913 kb on + strand at 594.913 kb on + strand at 594.913 kb on + strand at 594.913 kb on + strand at 594.913 kb on + strand at 594.913 kb on + strand at 594.913 kb on + strand at 594.913 kb on + strand at 594.913 kb on + strand at 594.921 kb on - strand at 594.921 kb on - strand at 594.921 kb on - strand at 594.921 kb on - strand at 594.921 kb on - strand at 594.921 kb on - strand at 594.921 kb on - strand at 594.921 kb on - strand at 594.931 kb on + strand at 594.949 kb on + strand at 594.957 kb on + strand at 594.957 kb on + strand at 594.957 kb on + strand at 594.965 kb on + strand at 594.965 kb on - strand at 594.972 kb on + strand at 594.972 kb on + strand at 594.972 kb on + strand at 594.979 kb on - strand at 594.980 kb on - strand at 594.980 kb on - strand at 594.990 kb on - strand at 595.005 kb on + strand at 595.010 kb on + strand at 595.055 kb on + strand at 595.055 kb on + strand at 595.062 kb on + strand at 595.070 kb on - strand at 595.085 kb on - strand at 595.139 kb on + strand at 595.143 kb on + strand at 595.151 kb on - strand at 595.151 kb on - strand at 595.162 kb on + strand at 595.162 kb on + strand at 595.170 kb on - strand at 595.207 kb on + strand at 595.219 kb on + strand at 595.263 kb on + strand at 595.269 kb on + strand at 595.275 kb on + strand at 595.277 kb on - strand at 595.277 kb on - strand at 595.291 kb on - strand at 595.300 kb on + strand at 595.339 kb on - strand, within Shewana3_0504 at 595.341 kb on + strand, within Shewana3_0504 at 595.341 kb on - strand, within Shewana3_0504 at 595.349 kb on - strand, within Shewana3_0504 at 595.349 kb on - strand, within Shewana3_0504 at 595.367 kb on + strand, within Shewana3_0504 at 595.372 kb on - strand, within Shewana3_0504 at 595.388 kb on + strand, within Shewana3_0504 at 595.416 kb on - strand, within Shewana3_0504 at 595.448 kb on + strand, within Shewana3_0504 at 595.489 kb on + strand, within Shewana3_0504 at 595.491 kb on + strand, within Shewana3_0504 at 595.501 kb on + strand, within Shewana3_0504 at 595.501 kb on + strand, within Shewana3_0504 at 595.506 kb on + strand, within Shewana3_0504 at 595.509 kb on - strand, within Shewana3_0504 at 595.557 kb on + strand, within Shewana3_0504 at 595.563 kb on + strand, within Shewana3_0504 at 595.611 kb on - strand, within Shewana3_0504 at 595.632 kb on + strand, within Shewana3_0504 at 595.642 kb on - strand, within Shewana3_0504 at 595.680 kb on + strand, within Shewana3_0504 at 595.703 kb on + strand, within Shewana3_0504 at 595.703 kb on + strand, within Shewana3_0504 at 595.703 kb on + strand, within Shewana3_0504 at 595.708 kb on + strand, within Shewana3_0504 at 595.711 kb on - strand, within Shewana3_0504 at 595.716 kb on - strand, within Shewana3_0504 at 595.719 kb on + strand, within Shewana3_0504 at 595.733 kb on - strand, within Shewana3_0504 at 595.762 kb on + strand, within Shewana3_0504 at 595.770 kb on - strand, within Shewana3_0504 at 595.851 kb on + strand, within Shewana3_0504 at 595.851 kb on + strand, within Shewana3_0504 at 595.851 kb on + strand, within Shewana3_0504 at 595.851 kb on + strand, within Shewana3_0504 at 595.851 kb on + strand, within Shewana3_0504 at 595.851 kb on + strand, within Shewana3_0504 at 595.851 kb on + strand, within Shewana3_0504 at 595.851 kb on + strand, within Shewana3_0504 at 595.851 kb on + strand, within Shewana3_0504 at 595.851 kb on + strand, within Shewana3_0504 at 595.851 kb on + strand, within Shewana3_0504 at 595.851 kb on + strand, within Shewana3_0504 at 595.851 kb on + strand, within Shewana3_0504 at 595.851 kb on + strand, within Shewana3_0504 at 595.851 kb on + strand, within Shewana3_0504 at 595.851 kb on + strand, within Shewana3_0504 at 595.851 kb on + strand, within Shewana3_0504 at 595.851 kb on + strand, within Shewana3_0504 at 595.851 kb on + strand, within Shewana3_0504 at 595.853 kb on + strand, within Shewana3_0504 at 595.859 kb on - strand, within Shewana3_0504 at 595.859 kb on - strand, within Shewana3_0504 at 595.859 kb on - strand, within Shewana3_0504 at 595.859 kb on - strand, within Shewana3_0504 at 595.859 kb on - strand, within Shewana3_0504 at 595.859 kb on - strand, within Shewana3_0504 at 595.859 kb on - strand, within Shewana3_0504 at 595.859 kb on - strand, within Shewana3_0504 at 595.859 kb on - strand, within Shewana3_0504 at 595.859 kb on - strand, within Shewana3_0504 at 595.859 kb on - strand, within Shewana3_0504 at 595.861 kb on - strand, within Shewana3_0504 at 595.960 kb on - strand, within Shewana3_0504 at 595.980 kb on + strand, within Shewana3_0504 at 595.982 kb on - strand, within Shewana3_0504 at 596.004 kb on + strand, within Shewana3_0504 at 596.024 kb on + strand, within Shewana3_0504 at 596.024 kb on + strand, within Shewana3_0504 at 596.051 kb on + strand, within Shewana3_0504 at 596.072 kb on + strand at 596.077 kb on + strand at 596.085 kb on - strand at 596.098 kb on + strand at 596.125 kb on + strand at 596.150 kb on - strand at 596.150 kb on - strand at 596.152 kb on + strand at 596.190 kb on - strand at 596.207 kb on + strand at 596.218 kb on + strand at 596.218 kb on + strand at 596.223 kb on + strand at 596.223 kb on + strand at 596.226 kb on - strand at 596.233 kb on + strand at 596.365 kb on - strand at 596.492 kb on + strand, within fre at 596.710 kb on - strand, within fre at 596.759 kb on + strand, within fre at 596.794 kb on + strand, within fre at 596.794 kb on + strand, within fre at 596.829 kb on - strand, within fre
Per-strain Table
Position Strand Gene LocusTag Fraction Thymidine (C) remove 594,299 + -1.9 594,301 + +0.9 594,307 - +0.1 594,328 - -0.1 594,355 + +1.3 594,375 + -0.9 594,474 + +0.3 594,474 + +4.4 594,474 + +1.4 594,474 + -1.5 594,482 - +1.5 594,543 + +1.7 594,543 + -0.3 594,543 + -0.3 594,551 - +1.9 594,559 + +0.5 594,610 + +4.2 594,619 - -0.5 594,629 + +0.3 594,651 - +1.2 594,651 - -0.4 594,683 + +1.0 594,688 + +1.1 594,707 + +0.2 594,708 + +1.0 594,708 + +1.0 594,716 - +0.0 594,718 + +1.0 594,724 + +0.8 594,724 + +0.4 594,724 + +0.0 594,732 - -0.4 594,732 - -0.9 594,732 - -1.0 594,732 - +1.8 594,732 - +0.5 594,732 - +0.4 594,744 + +0.6 594,752 - +0.7 594,795 + -0.7 594,803 - +0.4 594,811 - -1.9 594,813 - +1.0 594,820 + +0.2 594,855 + +0.0 594,913 + +0.3 594,913 + +0.1 594,913 + -0.5 594,913 + -1.0 594,913 + -0.0 594,913 + +0.9 594,913 + -0.2 594,913 + +0.1 594,913 + +0.7 594,913 + +0.3 594,913 + -0.1 594,913 + -0.4 594,921 - +1.7 594,921 - +0.1 594,921 - +1.0 594,921 - +1.6 594,921 - +1.9 594,921 - -1.3 594,921 - -1.4 594,921 - -0.3 594,931 + +1.5 594,949 + -0.3 594,957 + +1.3 594,957 + +0.7 594,957 + -0.1 594,965 + -0.2 594,965 - +1.8 594,972 + +1.4 594,972 + +0.4 594,972 + -0.4 594,979 - -1.0 594,980 - -0.5 594,980 - -0.3 594,990 - +1.2 595,005 + -0.7 595,010 + +1.7 595,055 + +1.1 595,055 + -0.6 595,062 + +1.5 595,070 - +1.1 595,085 - +1.7 595,139 + -0.3 595,143 + -0.2 595,151 - +1.4 595,151 - +1.7 595,162 + +1.1 595,162 + -1.2 595,170 - -1.1 595,207 + +1.3 595,219 + +0.9 595,263 + +1.1 595,269 + +1.5 595,275 + +1.2 595,277 - +1.3 595,277 - -1.1 595,291 - +0.1 595,300 + -0.4 595,339 - Shewana3_0504 0.11 -1.2 595,341 + Shewana3_0504 0.12 -0.1 595,341 - Shewana3_0504 0.12 +1.8 595,349 - Shewana3_0504 0.13 -1.3 595,349 - Shewana3_0504 0.13 -0.5 595,367 + Shewana3_0504 0.15 -2.2 595,372 - Shewana3_0504 0.15 +0.3 595,388 + Shewana3_0504 0.17 -0.5 595,416 - Shewana3_0504 0.20 +0.4 595,448 + Shewana3_0504 0.23 -0.1 595,489 + Shewana3_0504 0.28 +1.4 595,491 + Shewana3_0504 0.28 -0.5 595,501 + Shewana3_0504 0.29 +1.1 595,501 + Shewana3_0504 0.29 -2.6 595,506 + Shewana3_0504 0.30 -0.3 595,509 - Shewana3_0504 0.30 -1.4 595,557 + Shewana3_0504 0.35 -0.0 595,563 + Shewana3_0504 0.36 +1.7 595,611 - Shewana3_0504 0.41 -2.7 595,632 + Shewana3_0504 0.43 +0.6 595,642 - Shewana3_0504 0.45 -0.7 595,680 + Shewana3_0504 0.49 -0.2 595,703 + Shewana3_0504 0.51 +0.7 595,703 + Shewana3_0504 0.51 -1.0 595,703 + Shewana3_0504 0.51 +0.5 595,708 + Shewana3_0504 0.52 +1.0 595,711 - Shewana3_0504 0.52 -0.3 595,716 - Shewana3_0504 0.53 -0.4 595,719 + Shewana3_0504 0.53 -0.2 595,733 - Shewana3_0504 0.55 -0.8 595,762 + Shewana3_0504 0.58 -0.1 595,770 - Shewana3_0504 0.59 -0.7 595,851 + Shewana3_0504 0.67 +0.8 595,851 + Shewana3_0504 0.67 -0.6 595,851 + Shewana3_0504 0.67 -0.1 595,851 + Shewana3_0504 0.67 -0.6 595,851 + Shewana3_0504 0.67 +0.7 595,851 + Shewana3_0504 0.67 -0.6 595,851 + Shewana3_0504 0.67 -0.5 595,851 + Shewana3_0504 0.67 +0.2 595,851 + Shewana3_0504 0.67 +0.8 595,851 + Shewana3_0504 0.67 +0.5 595,851 + Shewana3_0504 0.67 +1.3 595,851 + Shewana3_0504 0.67 +1.1 595,851 + Shewana3_0504 0.67 -0.7 595,851 + Shewana3_0504 0.67 +0.1 595,851 + Shewana3_0504 0.67 -0.1 595,851 + Shewana3_0504 0.67 +1.1 595,851 + Shewana3_0504 0.67 -0.0 595,851 + Shewana3_0504 0.67 -0.3 595,851 + Shewana3_0504 0.67 -0.5 595,853 + Shewana3_0504 0.68 +0.3 595,859 - Shewana3_0504 0.68 +1.5 595,859 - Shewana3_0504 0.68 -0.9 595,859 - Shewana3_0504 0.68 +2.3 595,859 - Shewana3_0504 0.68 +1.3 595,859 - Shewana3_0504 0.68 +0.7 595,859 - Shewana3_0504 0.68 +1.1 595,859 - Shewana3_0504 0.68 -0.1 595,859 - Shewana3_0504 0.68 -1.1 595,859 - Shewana3_0504 0.68 +0.3 595,859 - Shewana3_0504 0.68 -0.0 595,859 - Shewana3_0504 0.68 +0.3 595,861 - Shewana3_0504 0.69 +1.9 595,960 - Shewana3_0504 0.79 -1.0 595,980 + Shewana3_0504 0.82 +0.3 595,982 - Shewana3_0504 0.82 +2.3 596,004 + Shewana3_0504 0.84 -1.4 596,024 + Shewana3_0504 0.86 -0.4 596,024 + Shewana3_0504 0.86 -0.1 596,051 + Shewana3_0504 0.89 -0.3 596,072 + -0.6 596,077 + +0.2 596,085 - -1.4 596,098 + -0.5 596,125 + +1.4 596,150 - +0.1 596,150 - +0.1 596,152 + +1.3 596,190 - -0.6 596,207 + +1.2 596,218 + -0.7 596,218 + -1.0 596,223 + -0.8 596,223 + +1.7 596,226 - +1.3 596,233 + +0.1 596,365 - +0.6 596,492 + fre Shewana3_0505 0.11 +1.1 596,710 - fre Shewana3_0505 0.42 -0.6 596,759 + fre Shewana3_0505 0.49 -1.2 596,794 + fre Shewana3_0505 0.54 +3.4 596,794 + fre Shewana3_0505 0.54 -0.8 596,829 - fre Shewana3_0505 0.59 +0.2
Or see this region's nucleotide sequence