Experiment: Thymidine (C)
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt Shewana3_0418 and Shewana3_0419 are separated by 122 nucleotides Shewana3_0419 and Shewana3_0420 are separated by 307 nucleotides
Shewana3_0418: Shewana3_0418 - type II secretion system protein (RefSeq), at 475,431 to 476,702
_0418
Shewana3_0419: Shewana3_0419 - type IV-A pilus assembly ATPase PilB (RefSeq), at 476,825 to 478,534
_0419
Shewana3_0420: Shewana3_0420 - O-antigen polymerase (RefSeq), at 478,842 to 480,278
_0420
Position (kb) 476
477
478
479 Strain fitness (log2 ratio) -3
-2
-1
0
1
2
3
4 at 476.070 kb on + strand, within Shewana3_0418 at 476.091 kb on + strand, within Shewana3_0418 at 476.202 kb on + strand, within Shewana3_0418 at 476.224 kb on + strand, within Shewana3_0418 at 476.229 kb on + strand, within Shewana3_0418 at 476.384 kb on + strand, within Shewana3_0418 at 476.490 kb on - strand, within Shewana3_0418 at 476.515 kb on + strand, within Shewana3_0418 at 476.515 kb on + strand, within Shewana3_0418 at 476.522 kb on + strand, within Shewana3_0418 at 476.589 kb on + strand at 476.807 kb on - strand at 476.902 kb on + strand at 476.912 kb on + strand at 476.913 kb on + strand at 476.920 kb on - strand at 476.920 kb on - strand at 477.054 kb on + strand, within Shewana3_0419 at 477.055 kb on + strand, within Shewana3_0419 at 477.055 kb on - strand, within Shewana3_0419 at 477.063 kb on - strand, within Shewana3_0419 at 477.105 kb on - strand, within Shewana3_0419 at 477.128 kb on + strand, within Shewana3_0419 at 477.238 kb on + strand, within Shewana3_0419 at 477.266 kb on - strand, within Shewana3_0419 at 477.303 kb on + strand, within Shewana3_0419 at 477.356 kb on - strand, within Shewana3_0419 at 477.378 kb on + strand, within Shewana3_0419 at 477.409 kb on - strand, within Shewana3_0419 at 477.409 kb on - strand, within Shewana3_0419 at 477.488 kb on - strand, within Shewana3_0419 at 477.506 kb on + strand, within Shewana3_0419 at 477.506 kb on + strand, within Shewana3_0419 at 477.511 kb on + strand, within Shewana3_0419 at 477.514 kb on - strand, within Shewana3_0419 at 477.514 kb on - strand, within Shewana3_0419 at 477.514 kb on - strand, within Shewana3_0419 at 477.514 kb on - strand, within Shewana3_0419 at 477.514 kb on - strand, within Shewana3_0419 at 477.514 kb on - strand, within Shewana3_0419 at 477.516 kb on + strand, within Shewana3_0419 at 477.516 kb on + strand, within Shewana3_0419 at 477.516 kb on + strand, within Shewana3_0419 at 477.524 kb on - strand, within Shewana3_0419 at 477.524 kb on - strand, within Shewana3_0419 at 477.569 kb on + strand, within Shewana3_0419 at 477.577 kb on - strand, within Shewana3_0419 at 477.700 kb on + strand, within Shewana3_0419 at 477.708 kb on - strand, within Shewana3_0419 at 477.772 kb on - strand, within Shewana3_0419 at 477.791 kb on - strand, within Shewana3_0419 at 477.838 kb on - strand, within Shewana3_0419 at 477.930 kb on - strand, within Shewana3_0419 at 478.059 kb on + strand, within Shewana3_0419 at 478.062 kb on - strand, within Shewana3_0419 at 478.073 kb on + strand, within Shewana3_0419 at 478.119 kb on + strand, within Shewana3_0419 at 478.127 kb on - strand, within Shewana3_0419 at 478.210 kb on + strand, within Shewana3_0419 at 478.210 kb on + strand, within Shewana3_0419 at 478.218 kb on - strand, within Shewana3_0419 at 478.218 kb on - strand, within Shewana3_0419 at 478.218 kb on - strand, within Shewana3_0419 at 478.367 kb on - strand at 478.369 kb on + strand at 478.392 kb on + strand at 478.392 kb on + strand at 478.400 kb on - strand at 478.400 kb on - strand at 478.405 kb on - strand at 478.470 kb on + strand at 478.470 kb on + strand at 478.470 kb on + strand at 478.470 kb on + strand at 478.475 kb on + strand at 478.478 kb on - strand at 478.483 kb on - strand at 478.490 kb on - strand at 478.502 kb on + strand at 478.507 kb on - strand at 478.513 kb on + strand at 478.514 kb on + strand at 478.521 kb on - strand at 478.522 kb on - strand at 478.522 kb on - strand at 478.522 kb on - strand at 478.558 kb on - strand at 478.686 kb on + strand at 478.686 kb on + strand at 478.686 kb on + strand at 478.686 kb on + strand at 478.686 kb on + strand at 478.696 kb on + strand at 478.725 kb on - strand at 478.799 kb on - strand at 478.823 kb on + strand at 478.841 kb on - strand at 478.867 kb on - strand at 478.876 kb on + strand at 478.876 kb on + strand at 478.876 kb on + strand at 478.876 kb on + strand at 478.884 kb on - strand at 478.884 kb on - strand at 478.884 kb on - strand at 478.884 kb on - strand at 478.884 kb on - strand at 478.930 kb on - strand at 478.939 kb on + strand at 478.945 kb on + strand at 478.946 kb on + strand at 478.953 kb on - strand at 478.953 kb on - strand at 478.953 kb on - strand at 478.955 kb on + strand at 478.955 kb on + strand at 478.955 kb on + strand at 478.955 kb on + strand at 478.963 kb on + strand at 478.977 kb on - strand at 479.005 kb on + strand, within Shewana3_0420 at 479.013 kb on - strand, within Shewana3_0420 at 479.033 kb on + strand, within Shewana3_0420 at 479.057 kb on + strand, within Shewana3_0420 at 479.059 kb on + strand, within Shewana3_0420 at 479.059 kb on + strand, within Shewana3_0420 at 479.067 kb on - strand, within Shewana3_0420 at 479.069 kb on + strand, within Shewana3_0420 at 479.071 kb on + strand, within Shewana3_0420 at 479.075 kb on - strand, within Shewana3_0420 at 479.083 kb on + strand, within Shewana3_0420 at 479.185 kb on - strand, within Shewana3_0420 at 479.198 kb on - strand, within Shewana3_0420 at 479.200 kb on - strand, within Shewana3_0420 at 479.205 kb on + strand, within Shewana3_0420 at 479.205 kb on + strand, within Shewana3_0420 at 479.210 kb on + strand, within Shewana3_0420 at 479.213 kb on - strand, within Shewana3_0420 at 479.213 kb on - strand, within Shewana3_0420 at 479.213 kb on - strand, within Shewana3_0420 at 479.215 kb on + strand, within Shewana3_0420 at 479.215 kb on + strand, within Shewana3_0420 at 479.215 kb on + strand, within Shewana3_0420 at 479.215 kb on + strand, within Shewana3_0420 at 479.218 kb on - strand, within Shewana3_0420 at 479.226 kb on + strand, within Shewana3_0420 at 479.226 kb on + strand, within Shewana3_0420 at 479.226 kb on - strand, within Shewana3_0420 at 479.226 kb on - strand, within Shewana3_0420 at 479.234 kb on - strand, within Shewana3_0420 at 479.315 kb on - strand, within Shewana3_0420 at 479.323 kb on - strand, within Shewana3_0420 at 479.328 kb on + strand, within Shewana3_0420 at 479.375 kb on + strand, within Shewana3_0420 at 479.451 kb on + strand, within Shewana3_0420 at 479.452 kb on + strand, within Shewana3_0420 at 479.458 kb on + strand, within Shewana3_0420 at 479.458 kb on + strand, within Shewana3_0420 at 479.459 kb on - strand, within Shewana3_0420 at 479.459 kb on - strand, within Shewana3_0420 at 479.473 kb on + strand, within Shewana3_0420 at 479.473 kb on + strand, within Shewana3_0420 at 479.473 kb on + strand, within Shewana3_0420 at 479.479 kb on - strand, within Shewana3_0420 at 479.481 kb on - strand, within Shewana3_0420 at 479.481 kb on - strand, within Shewana3_0420 at 479.481 kb on - strand, within Shewana3_0420
Per-strain Table
Position Strand Gene LocusTag Fraction Thymidine (C) remove 476,070 + Shewana3_0418 0.50 +0.9 476,091 + Shewana3_0418 0.52 -1.9 476,202 + Shewana3_0418 0.61 -1.9 476,224 + Shewana3_0418 0.62 +0.5 476,229 + Shewana3_0418 0.63 +1.0 476,384 + Shewana3_0418 0.75 +0.5 476,490 - Shewana3_0418 0.83 -0.2 476,515 + Shewana3_0418 0.85 -0.1 476,515 + Shewana3_0418 0.85 -0.4 476,522 + Shewana3_0418 0.86 +1.2 476,589 + +1.2 476,807 - -0.4 476,902 + -0.3 476,912 + -0.5 476,913 + +2.2 476,920 - -0.4 476,920 - -0.0 477,054 + Shewana3_0419 0.13 +0.7 477,055 + Shewana3_0419 0.13 +1.1 477,055 - Shewana3_0419 0.13 -1.2 477,063 - Shewana3_0419 0.14 -2.3 477,105 - Shewana3_0419 0.16 +0.2 477,128 + Shewana3_0419 0.18 +1.4 477,238 + Shewana3_0419 0.24 -0.5 477,266 - Shewana3_0419 0.26 +0.2 477,303 + Shewana3_0419 0.28 -0.4 477,356 - Shewana3_0419 0.31 +0.3 477,378 + Shewana3_0419 0.32 +2.4 477,409 - Shewana3_0419 0.34 +0.0 477,409 - Shewana3_0419 0.34 -0.2 477,488 - Shewana3_0419 0.39 +1.2 477,506 + Shewana3_0419 0.40 +1.4 477,506 + Shewana3_0419 0.40 +1.5 477,511 + Shewana3_0419 0.40 +0.5 477,514 - Shewana3_0419 0.40 -0.3 477,514 - Shewana3_0419 0.40 -1.2 477,514 - Shewana3_0419 0.40 +3.1 477,514 - Shewana3_0419 0.40 -0.1 477,514 - Shewana3_0419 0.40 -0.5 477,514 - Shewana3_0419 0.40 +0.2 477,516 + Shewana3_0419 0.40 -1.7 477,516 + Shewana3_0419 0.40 +1.3 477,516 + Shewana3_0419 0.40 -0.1 477,524 - Shewana3_0419 0.41 -0.1 477,524 - Shewana3_0419 0.41 +0.8 477,569 + Shewana3_0419 0.44 +0.0 477,577 - Shewana3_0419 0.44 +1.3 477,700 + Shewana3_0419 0.51 +1.0 477,708 - Shewana3_0419 0.52 +1.1 477,772 - Shewana3_0419 0.55 -0.4 477,791 - Shewana3_0419 0.56 -3.0 477,838 - Shewana3_0419 0.59 +1.0 477,930 - Shewana3_0419 0.65 +0.3 478,059 + Shewana3_0419 0.72 +0.8 478,062 - Shewana3_0419 0.72 +0.4 478,073 + Shewana3_0419 0.73 +0.2 478,119 + Shewana3_0419 0.76 -1.8 478,127 - Shewana3_0419 0.76 -0.2 478,210 + Shewana3_0419 0.81 +0.7 478,210 + Shewana3_0419 0.81 -0.0 478,218 - Shewana3_0419 0.81 +0.6 478,218 - Shewana3_0419 0.81 -0.5 478,218 - Shewana3_0419 0.81 -0.7 478,367 - -0.1 478,369 + +1.2 478,392 + -0.3 478,392 + -0.0 478,400 - +2.0 478,400 - +0.3 478,405 - -0.6 478,470 + +0.5 478,470 + -0.3 478,470 + +1.5 478,470 + -0.5 478,475 + -0.2 478,478 - +2.1 478,483 - -0.3 478,490 - +0.5 478,502 + +0.6 478,507 - +0.5 478,513 + -0.4 478,514 + +0.0 478,521 - -0.5 478,522 - -0.3 478,522 - +1.4 478,522 - -0.9 478,558 - +1.5 478,686 + +1.5 478,686 + +0.3 478,686 + -1.5 478,686 + +1.2 478,686 + +0.8 478,696 + -0.0 478,725 - +0.6 478,799 - +0.9 478,823 + +0.8 478,841 - -0.0 478,867 - -0.4 478,876 + -0.4 478,876 + -1.5 478,876 + +1.0 478,876 + +0.0 478,884 - +0.1 478,884 - +1.1 478,884 - +2.0 478,884 - +0.5 478,884 - +1.3 478,930 - +0.2 478,939 + -0.2 478,945 + +1.4 478,946 + -0.4 478,953 - +0.4 478,953 - -0.4 478,953 - +0.3 478,955 + -0.1 478,955 + +1.2 478,955 + +0.4 478,955 + +1.4 478,963 + +1.3 478,977 - +0.1 479,005 + Shewana3_0420 0.11 +0.3 479,013 - Shewana3_0420 0.12 -0.5 479,033 + Shewana3_0420 0.13 +0.4 479,057 + Shewana3_0420 0.15 +0.4 479,059 + Shewana3_0420 0.15 +1.5 479,059 + Shewana3_0420 0.15 -0.5 479,067 - Shewana3_0420 0.16 +1.2 479,069 + Shewana3_0420 0.16 +1.5 479,071 + Shewana3_0420 0.16 -0.7 479,075 - Shewana3_0420 0.16 +1.3 479,083 + Shewana3_0420 0.17 +0.0 479,185 - Shewana3_0420 0.24 -2.6 479,198 - Shewana3_0420 0.25 +1.0 479,200 - Shewana3_0420 0.25 +0.4 479,205 + Shewana3_0420 0.25 -2.0 479,205 + Shewana3_0420 0.25 +0.0 479,210 + Shewana3_0420 0.26 -0.4 479,213 - Shewana3_0420 0.26 +4.3 479,213 - Shewana3_0420 0.26 +1.6 479,213 - Shewana3_0420 0.26 -0.3 479,215 + Shewana3_0420 0.26 +1.4 479,215 + Shewana3_0420 0.26 +1.1 479,215 + Shewana3_0420 0.26 -0.2 479,215 + Shewana3_0420 0.26 -0.3 479,218 - Shewana3_0420 0.26 +0.2 479,226 + Shewana3_0420 0.27 +0.1 479,226 + Shewana3_0420 0.27 +1.3 479,226 - Shewana3_0420 0.27 +1.0 479,226 - Shewana3_0420 0.27 +1.7 479,234 - Shewana3_0420 0.27 +1.4 479,315 - Shewana3_0420 0.33 +1.4 479,323 - Shewana3_0420 0.33 +1.6 479,328 + Shewana3_0420 0.34 -0.3 479,375 + Shewana3_0420 0.37 +1.8 479,451 + Shewana3_0420 0.42 +1.2 479,452 + Shewana3_0420 0.42 +0.9 479,458 + Shewana3_0420 0.43 +1.8 479,458 + Shewana3_0420 0.43 +1.1 479,459 - Shewana3_0420 0.43 +1.6 479,459 - Shewana3_0420 0.43 +1.0 479,473 + Shewana3_0420 0.44 +1.7 479,473 + Shewana3_0420 0.44 +0.8 479,473 + Shewana3_0420 0.44 -0.4 479,479 - Shewana3_0420 0.44 -0.4 479,481 - Shewana3_0420 0.44 +1.8 479,481 - Shewana3_0420 0.44 -0.6 479,481 - Shewana3_0420 0.44 -0.5
Or see this region's nucleotide sequence