Experiment: Thymidine (C)
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt Shewana3_0356 and ilvM overlap by 4 nucleotides ilvM and Shewana3_0358 are separated by 79 nucleotides
Shewana3_0356: Shewana3_0356 - acetolactate synthase 2 catalytic subunit (RefSeq), at 392,186 to 393,859
_0356
Shewana3_0357: ilvM - acetolactate synthase 2 regulatory subunit (RefSeq), at 393,856 to 394,116
ilvM
Shewana3_0358: Shewana3_0358 - dihydroxy-acid dehydratase (RefSeq), at 394,196 to 396,055
_0358
Position (kb) 393
394
395 Strain fitness (log2 ratio) -5
-4
-3
-2
-1
0
1 at 392.899 kb on + strand, within Shewana3_0356 at 392.973 kb on + strand, within Shewana3_0356 at 392.981 kb on + strand, within Shewana3_0356 at 393.181 kb on - strand, within Shewana3_0356 at 393.298 kb on + strand, within Shewana3_0356 at 393.343 kb on - strand, within Shewana3_0356 at 393.359 kb on + strand, within Shewana3_0356 at 393.391 kb on - strand, within Shewana3_0356 at 393.398 kb on + strand, within Shewana3_0356 at 393.406 kb on - strand, within Shewana3_0356 at 393.406 kb on - strand, within Shewana3_0356 at 393.419 kb on + strand, within Shewana3_0356 at 393.530 kb on - strand, within Shewana3_0356 at 393.672 kb on - strand, within Shewana3_0356 at 393.719 kb on - strand at 393.880 kb on - strand at 393.943 kb on - strand, within ilvM at 394.024 kb on - strand, within ilvM at 394.071 kb on + strand, within ilvM at 394.120 kb on - strand at 394.133 kb on + strand at 394.152 kb on + strand at 394.184 kb on + strand at 394.473 kb on - strand, within Shewana3_0358 at 394.503 kb on + strand, within Shewana3_0358 at 394.643 kb on - strand, within Shewana3_0358 at 394.755 kb on + strand, within Shewana3_0358 at 394.858 kb on + strand, within Shewana3_0358 at 394.916 kb on + strand, within Shewana3_0358 at 394.916 kb on + strand, within Shewana3_0358 at 394.950 kb on + strand, within Shewana3_0358 at 394.985 kb on - strand, within Shewana3_0358 at 395.037 kb on - strand, within Shewana3_0358 at 395.094 kb on + strand, within Shewana3_0358
Per-strain Table
Position Strand Gene LocusTag Fraction Thymidine (C) remove 392,899 + Shewana3_0356 0.43 +0.7 392,973 + Shewana3_0356 0.47 -0.2 392,981 + Shewana3_0356 0.47 -0.0 393,181 - Shewana3_0356 0.59 -3.4 393,298 + Shewana3_0356 0.66 +1.2 393,343 - Shewana3_0356 0.69 -2.8 393,359 + Shewana3_0356 0.70 +1.1 393,391 - Shewana3_0356 0.72 -3.1 393,398 + Shewana3_0356 0.72 -0.3 393,406 - Shewana3_0356 0.73 -1.7 393,406 - Shewana3_0356 0.73 -3.5 393,419 + Shewana3_0356 0.74 -0.7 393,530 - Shewana3_0356 0.80 -2.8 393,672 - Shewana3_0356 0.89 -2.8 393,719 - -2.5 393,880 - -3.2 393,943 - ilvM Shewana3_0357 0.33 -3.4 394,024 - ilvM Shewana3_0357 0.64 -3.9 394,071 + ilvM Shewana3_0357 0.82 -0.8 394,120 - -4.9 394,133 + +0.7 394,152 + -0.2 394,184 + +1.2 394,473 - Shewana3_0358 0.15 -3.9 394,503 + Shewana3_0358 0.17 -4.3 394,643 - Shewana3_0358 0.24 -5.2 394,755 + Shewana3_0358 0.30 -5.7 394,858 + Shewana3_0358 0.36 -2.7 394,916 + Shewana3_0358 0.39 -2.5 394,916 + Shewana3_0358 0.39 -2.3 394,950 + Shewana3_0358 0.41 -4.2 394,985 - Shewana3_0358 0.42 -4.6 395,037 - Shewana3_0358 0.45 -3.0 395,094 + Shewana3_0358 0.48 -3.8
Or see this region's nucleotide sequence