Experiment: Thymidine (C)
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt Shewana3_0281 and Shewana3_0282 are separated by 46 nucleotides Shewana3_0282 and Shewana3_0283 are separated by 70 nucleotides Shewana3_0283 and Shewana3_0284 are separated by 32 nucleotides Shewana3_0284 and Shewana3_0285 are separated by 119 nucleotides
Shewana3_0281: Shewana3_0281 - hypothetical protein (RefSeq), at 315,052 to 315,573
_0281
Shewana3_0282: Shewana3_0282 - two component transcriptional regulator (RefSeq), at 315,620 to 316,297
_0282
Shewana3_0283: Shewana3_0283 - ATPase domain-containing protein (RefSeq), at 316,368 to 317,603
_0283
Shewana3_0284: Shewana3_0284 - pseudouridine synthase Rlu family protein (RefSeq), at 317,636 to 318,325
_0284
Shewana3_0285: Shewana3_0285 - hypothetical protein (RefSeq), at 318,445 to 318,612
_0285
Position (kb) 316
317
318 Strain fitness (log2 ratio) -2
-1
0
1
2
3
4
5 at 315.377 kb on + strand, within Shewana3_0281 at 315.568 kb on + strand at 315.576 kb on - strand at 315.576 kb on - strand at 315.576 kb on - strand at 315.576 kb on - strand at 315.600 kb on - strand at 315.605 kb on - strand at 315.768 kb on - strand, within Shewana3_0282 at 315.850 kb on - strand, within Shewana3_0282 at 315.925 kb on - strand, within Shewana3_0282 at 315.981 kb on - strand, within Shewana3_0282 at 315.999 kb on + strand, within Shewana3_0282 at 316.035 kb on + strand, within Shewana3_0282 at 316.070 kb on - strand, within Shewana3_0282 at 316.257 kb on - strand at 316.299 kb on - strand at 316.300 kb on - strand at 316.543 kb on - strand, within Shewana3_0283 at 316.560 kb on + strand, within Shewana3_0283 at 316.560 kb on + strand, within Shewana3_0283 at 316.560 kb on + strand, within Shewana3_0283 at 316.647 kb on + strand, within Shewana3_0283 at 316.676 kb on + strand, within Shewana3_0283 at 316.763 kb on - strand, within Shewana3_0283 at 316.773 kb on + strand, within Shewana3_0283 at 316.773 kb on + strand, within Shewana3_0283 at 316.780 kb on + strand, within Shewana3_0283 at 316.780 kb on - strand, within Shewana3_0283 at 316.788 kb on - strand, within Shewana3_0283 at 316.834 kb on + strand, within Shewana3_0283 at 316.969 kb on - strand, within Shewana3_0283 at 317.037 kb on + strand, within Shewana3_0283 at 317.296 kb on - strand, within Shewana3_0283 at 317.358 kb on + strand, within Shewana3_0283 at 317.510 kb on - strand at 317.578 kb on + strand at 317.630 kb on - strand at 317.696 kb on + strand at 317.793 kb on + strand, within Shewana3_0284 at 317.793 kb on + strand, within Shewana3_0284 at 317.793 kb on + strand, within Shewana3_0284 at 317.793 kb on + strand, within Shewana3_0284 at 317.801 kb on - strand, within Shewana3_0284 at 317.801 kb on - strand, within Shewana3_0284 at 317.801 kb on - strand, within Shewana3_0284 at 317.859 kb on + strand, within Shewana3_0284 at 317.917 kb on + strand, within Shewana3_0284 at 318.015 kb on + strand, within Shewana3_0284 at 318.093 kb on + strand, within Shewana3_0284 at 318.129 kb on + strand, within Shewana3_0284 at 318.137 kb on - strand, within Shewana3_0284 at 318.236 kb on - strand, within Shewana3_0284 at 318.246 kb on - strand, within Shewana3_0284 at 318.294 kb on - strand at 318.523 kb on + strand, within Shewana3_0285 at 318.587 kb on + strand, within Shewana3_0285 at 318.587 kb on + strand, within Shewana3_0285 at 318.587 kb on + strand, within Shewana3_0285
Per-strain Table
Position Strand Gene LocusTag Fraction Thymidine (C) remove 315,377 + Shewana3_0281 0.62 -0.2 315,568 + +0.0 315,576 - -0.7 315,576 - +0.5 315,576 - +1.4 315,576 - -0.5 315,600 - -0.4 315,605 - +1.5 315,768 - Shewana3_0282 0.22 +1.2 315,850 - Shewana3_0282 0.34 +1.3 315,925 - Shewana3_0282 0.45 -0.4 315,981 - Shewana3_0282 0.53 +0.3 315,999 + Shewana3_0282 0.56 +1.8 316,035 + Shewana3_0282 0.61 -0.6 316,070 - Shewana3_0282 0.66 +1.1 316,257 - -0.2 316,299 - -0.7 316,300 - -0.7 316,543 - Shewana3_0283 0.14 +0.2 316,560 + Shewana3_0283 0.16 -0.2 316,560 + Shewana3_0283 0.16 -0.7 316,560 + Shewana3_0283 0.16 +1.0 316,647 + Shewana3_0283 0.23 -0.8 316,676 + Shewana3_0283 0.25 -0.4 316,763 - Shewana3_0283 0.32 -0.5 316,773 + Shewana3_0283 0.33 +1.1 316,773 + Shewana3_0283 0.33 -0.8 316,780 + Shewana3_0283 0.33 -2.3 316,780 - Shewana3_0283 0.33 -1.0 316,788 - Shewana3_0283 0.34 -0.4 316,834 + Shewana3_0283 0.38 -0.1 316,969 - Shewana3_0283 0.49 +0.1 317,037 + Shewana3_0283 0.54 +0.5 317,296 - Shewana3_0283 0.75 -0.4 317,358 + Shewana3_0283 0.80 +0.3 317,510 - -0.7 317,578 + -0.6 317,630 - -0.5 317,696 + +0.2 317,793 + Shewana3_0284 0.23 -1.5 317,793 + Shewana3_0284 0.23 +0.2 317,793 + Shewana3_0284 0.23 +1.5 317,793 + Shewana3_0284 0.23 -1.1 317,801 - Shewana3_0284 0.24 +1.7 317,801 - Shewana3_0284 0.24 +0.4 317,801 - Shewana3_0284 0.24 +1.9 317,859 + Shewana3_0284 0.32 +1.3 317,917 + Shewana3_0284 0.41 +0.1 318,015 + Shewana3_0284 0.55 -0.1 318,093 + Shewana3_0284 0.66 +0.9 318,129 + Shewana3_0284 0.71 -0.4 318,137 - Shewana3_0284 0.73 -0.3 318,236 - Shewana3_0284 0.87 -0.2 318,246 - Shewana3_0284 0.88 -0.7 318,294 - +1.4 318,523 + Shewana3_0285 0.46 +4.8 318,587 + Shewana3_0285 0.85 +0.9 318,587 + Shewana3_0285 0.85 +0.8 318,587 + Shewana3_0285 0.85 +0.2
Or see this region's nucleotide sequence