Experiment: Thymidine (C)
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt Shewana3_0241 and Shewana3_0242 overlap by 1 nucleotides Shewana3_0242 and Shewana3_0243 overlap by 8 nucleotides Shewana3_0243 and Shewana3_0244 are separated by 47 nucleotides Shewana3_0244 and Shewana3_0245 are separated by 33 nucleotides Shewana3_0245 and Shewana3_0246 are separated by 206 nucleotides
Shewana3_0241: Shewana3_0241 - two component transcriptional regulator (RefSeq), at 274,543 to 275,205
_0241
Shewana3_0242: Shewana3_0242 - peptidase (RefSeq), at 275,205 to 275,471
_0242
Shewana3_0243: Shewana3_0243 - diheme cytochrome c (RefSeq), at 275,464 to 276,027
_0243
Shewana3_0244: Shewana3_0244 - cytochrome c-type protein Shp (RefSeq), at 276,075 to 276,509
_0244
Shewana3_0245: Shewana3_0245 - cytochrome B561 (RefSeq), at 276,543 to 277,139
_0245
Shewana3_0246: Shewana3_0246 - hypothetical protein (RefSeq), at 277,346 to 277,768
_0246
Position (kb) 276
277 Strain fitness (log2 ratio) -1
0
1
2 at 275.161 kb on - strand at 275.377 kb on - strand, within Shewana3_0242 at 275.377 kb on - strand, within Shewana3_0242 at 275.377 kb on - strand, within Shewana3_0242 at 275.392 kb on + strand, within Shewana3_0242 at 275.454 kb on + strand at 275.540 kb on - strand, within Shewana3_0243 at 275.814 kb on - strand, within Shewana3_0243 at 275.846 kb on - strand, within Shewana3_0243 at 275.990 kb on - strand at 276.095 kb on + strand at 276.158 kb on - strand, within Shewana3_0244 at 276.186 kb on + strand, within Shewana3_0244 at 276.308 kb on + strand, within Shewana3_0244 at 276.377 kb on + strand, within Shewana3_0244 at 276.417 kb on + strand, within Shewana3_0244 at 276.440 kb on + strand, within Shewana3_0244 at 276.461 kb on - strand, within Shewana3_0244 at 276.461 kb on - strand, within Shewana3_0244 at 276.466 kb on - strand at 276.606 kb on - strand, within Shewana3_0245 at 276.836 kb on - strand, within Shewana3_0245 at 276.958 kb on + strand, within Shewana3_0245 at 276.983 kb on + strand, within Shewana3_0245 at 276.991 kb on - strand, within Shewana3_0245 at 277.052 kb on - strand, within Shewana3_0245 at 277.078 kb on - strand, within Shewana3_0245 at 277.164 kb on - strand
Per-strain Table
Position Strand Gene LocusTag Fraction Thymidine (C) remove 275,161 - +1.6 275,377 - Shewana3_0242 0.64 -1.0 275,377 - Shewana3_0242 0.64 -0.5 275,377 - Shewana3_0242 0.64 -0.4 275,392 + Shewana3_0242 0.70 +1.2 275,454 + +0.9 275,540 - Shewana3_0243 0.13 -0.1 275,814 - Shewana3_0243 0.62 -0.7 275,846 - Shewana3_0243 0.68 +1.6 275,990 - -0.5 276,095 + -0.3 276,158 - Shewana3_0244 0.19 +0.8 276,186 + Shewana3_0244 0.26 -0.8 276,308 + Shewana3_0244 0.54 -0.2 276,377 + Shewana3_0244 0.69 +0.6 276,417 + Shewana3_0244 0.79 +1.4 276,440 + Shewana3_0244 0.84 +0.4 276,461 - Shewana3_0244 0.89 +1.9 276,461 - Shewana3_0244 0.89 +1.3 276,466 - -0.2 276,606 - Shewana3_0245 0.11 -0.2 276,836 - Shewana3_0245 0.49 +1.6 276,958 + Shewana3_0245 0.70 -0.1 276,983 + Shewana3_0245 0.74 +1.3 276,991 - Shewana3_0245 0.75 -0.8 277,052 - Shewana3_0245 0.85 -0.6 277,078 - Shewana3_0245 0.90 +0.0 277,164 - +1.2
Or see this region's nucleotide sequence