Experiment: Thymidine (C)
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt Shewana3_4360 and Shewana3_4361 are separated by 407 nucleotides Shewana3_4361 and Shewana3_4362 are separated by 163 nucleotides
Shewana3_4360: Shewana3_4360 - hypothetical protein (RefSeq), at 245,592 to 245,894
_4360
Shewana3_4361: Shewana3_4361 - hypothetical protein (RefSeq), at 246,302 to 247,450
_4361
Shewana3_4362: Shewana3_4362 - phosphoadenosine phosphosulfate reductase (RefSeq), at 247,614 to 249,209
_4362
Position (kb) 246
247
248 Strain fitness (log2 ratio) -1
0
1
2 at 245.507 kb on + strand at 245.728 kb on + strand, within Shewana3_4360 at 245.771 kb on + strand, within Shewana3_4360 at 245.990 kb on + strand at 246.000 kb on + strand at 246.187 kb on - strand at 246.269 kb on + strand at 246.347 kb on + strand at 246.367 kb on - strand at 246.384 kb on + strand at 246.543 kb on - strand, within Shewana3_4361 at 246.588 kb on + strand, within Shewana3_4361 at 246.726 kb on + strand, within Shewana3_4361 at 246.770 kb on - strand, within Shewana3_4361 at 246.865 kb on - strand, within Shewana3_4361 at 246.865 kb on - strand, within Shewana3_4361 at 247.120 kb on + strand, within Shewana3_4361 at 247.368 kb on + strand at 247.624 kb on - strand at 247.727 kb on + strand at 247.775 kb on + strand, within Shewana3_4362 at 247.998 kb on - strand, within Shewana3_4362 at 248.241 kb on - strand, within Shewana3_4362 at 248.258 kb on + strand, within Shewana3_4362
Per-strain Table
Position Strand Gene LocusTag Fraction Thymidine (C) remove 245,507 + +2.1 245,728 + Shewana3_4360 0.45 +0.8 245,771 + Shewana3_4360 0.59 +0.8 245,990 + +0.1 246,000 + +1.5 246,187 - -1.7 246,269 + +0.8 246,347 + -1.2 246,367 - +0.3 246,384 + +0.8 246,543 - Shewana3_4361 0.21 -0.3 246,588 + Shewana3_4361 0.25 -0.6 246,726 + Shewana3_4361 0.37 -0.6 246,770 - Shewana3_4361 0.41 -0.6 246,865 - Shewana3_4361 0.49 +0.1 246,865 - Shewana3_4361 0.49 -0.9 247,120 + Shewana3_4361 0.71 +0.5 247,368 + +1.3 247,624 - -0.0 247,727 + +0.9 247,775 + Shewana3_4362 0.10 -0.5 247,998 - Shewana3_4362 0.24 +1.3 248,241 - Shewana3_4362 0.39 +0.4 248,258 + Shewana3_4362 0.40 -1.5
Or see this region's nucleotide sequence