Experiment: succinate (C)
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt Shew_3420 and Shew_3421 are separated by 8 nucleotides Shew_3421 and Shew_3422 are separated by 116 nucleotides Shew_3422 and Shew_3423 are separated by 477 nucleotides
Shew_3420: Shew_3420 - integral membrane sensor signal transduction histidine kinase (RefSeq), at 4,075,470 to 4,076,951
_3420
Shew_3421: Shew_3421 - hypothetical protein (RefSeq), at 4,076,960 to 4,077,235
_3421
Shew_3422: Shew_3422 - uroporphyrinogen decarboxylase (RefSeq), at 4,077,352 to 4,078,416
_3422
Shew_3423: Shew_3423 - anti-RNA polymerase sigma 70 factor (RefSeq), at 4,078,894 to 4,079,364
_3423
Position (kb) 4077
4078
4079 Strain fitness (log2 ratio) -2
-1
0
1 at 4076.464 kb on - strand, within Shew_3420 at 4076.562 kb on - strand, within Shew_3420 at 4076.562 kb on - strand, within Shew_3420 at 4076.790 kb on - strand, within Shew_3420 at 4077.049 kb on - strand, within Shew_3421 at 4078.589 kb on - strand at 4078.897 kb on - strand at 4078.970 kb on + strand, within Shew_3423
Per-strain Table
Position Strand Gene LocusTag Fraction succinate (C) remove 4,076,464 - Shew_3420 0.67 -0.4 4,076,562 - Shew_3420 0.74 +0.8 4,076,562 - Shew_3420 0.74 +0.3 4,076,790 - Shew_3420 0.89 -2.1 4,077,049 - Shew_3421 0.32 +0.4 4,078,589 - +0.7 4,078,897 - +0.2 4,078,970 + Shew_3423 0.16 +0.4
Or see this region's nucleotide sequence