Strain Fitness in Shewanella loihica PV-4 around Shew_2917

Experiment: succinate (C)

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntShew_2916 and Shew_2917 are separated by 99 nucleotidesShew_2917 and Shew_2918 are separated by 12 nucleotidesShew_2918 and Shew_R0093 are separated by 221 nucleotidesShew_R0093 and Shew_R0094 are separated by 54 nucleotidesShew_R0094 and Shew_R0095 are separated by 45 nucleotides Shew_2916: Shew_2916 - ribose-phosphate pyrophosphokinase (RefSeq), at 3,454,282 to 3,455,256 _2916 Shew_2917: Shew_2917 - hypothetical protein (RefSeq), at 3,455,356 to 3,455,763 _2917 Shew_2918: Shew_2918 - hypothetical protein (RefSeq), at 3,455,776 to 3,456,282 _2918 Shew_R0093: Shew_R0093 - tRNA-Leu (RefSeq), at 3,456,504 to 3,456,588 _R0093 Shew_R0094: Shew_R0094 - tRNA-Gln (RefSeq), at 3,456,643 to 3,456,717 _R0094 Shew_R0095: Shew_R0095 - tRNA-Leu (RefSeq), at 3,456,763 to 3,456,847 _R0095 Position (kb) 3455 3456Strain fitness (log2 ratio) -1 0 1at 3455.518 kb on + strand, within Shew_2917at 3456.012 kb on - strand, within Shew_2918

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Per-strain Table

Position Strand Gene LocusTag Fraction succinate (C)
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3,455,518 + Shew_2917 0.40 -0.8
3,456,012 - Shew_2918 0.47 -0.0

Or see this region's nucleotide sequence