Experiment: succinate (C)
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt Shew_2657 and Shew_2658 are separated by 43 nucleotides Shew_2658 and Shew_2659 are separated by 21 nucleotides Shew_2659 and Shew_2660 overlap by 14 nucleotides
Shew_2657: Shew_2657 - hypothetical protein (RefSeq), at 3,130,786 to 3,132,051
_2657
Shew_2658: Shew_2658 - ABC transporter-related protein (RefSeq), at 3,132,095 to 3,132,778
_2658
Shew_2659: Shew_2659 - hypothetical protein (RefSeq), at 3,132,800 to 3,134,065
_2659
Shew_2660: Shew_2660 - hypothetical protein (RefSeq), at 3,134,052 to 3,135,284
_2660
Position (kb) 3132
3133
3134
3135 Strain fitness (log2 ratio) -2
-1
0
1 at 3131.890 kb on + strand, within Shew_2657 at 3131.955 kb on - strand at 3132.008 kb on + strand at 3132.078 kb on + strand at 3132.798 kb on + strand at 3132.833 kb on - strand at 3133.300 kb on - strand, within Shew_2659 at 3134.312 kb on - strand, within Shew_2660 at 3134.505 kb on - strand, within Shew_2660 at 3134.638 kb on - strand, within Shew_2660 at 3135.030 kb on - strand, within Shew_2660
Per-strain Table
Position Strand Gene LocusTag Fraction succinate (C) remove 3,131,890 + Shew_2657 0.87 -0.4 3,131,955 - +0.1 3,132,008 + +0.4 3,132,078 + +1.2 3,132,798 + -0.8 3,132,833 - -0.1 3,133,300 - Shew_2659 0.39 -0.2 3,134,312 - Shew_2660 0.21 +0.1 3,134,505 - Shew_2660 0.37 -0.0 3,134,638 - Shew_2660 0.48 -2.0 3,135,030 - Shew_2660 0.79 -0.1
Or see this region's nucleotide sequence