Experiment: succinate (C)
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt Shew_2485 and Shew_2486 are separated by 9 nucleotides Shew_2486 and Shew_2487 are separated by 7 nucleotides Shew_2487 and Shew_2488 are separated by 51 nucleotides Shew_2488 and ffs are separated by 279 nucleotides ffs and Shew_2489 are separated by 165 nucleotides
Shew_2485: Shew_2485 - primosomal replication protein N'', putative (RefSeq), at 2,925,250 to 2,925,912
_2485
Shew_2486: Shew_2486 - hypothetical protein (RefSeq), at 2,925,922 to 2,926,611
_2486
Shew_2487: Shew_2487 - histone deacetylase superfamily protein (RefSeq), at 2,926,619 to 2,927,521
_2487
Shew_2488: Shew_2488 - hypothetical protein (RefSeq), at 2,927,573 to 2,927,851
_2488
Shew_R0086: ffs - SRP RNA; RNA component of signal recognition particle (NCBI), at 2,928,131 to 2,928,247
ffs
Shew_2489: Shew_2489 - helix-hairpin-helix repeat-containing competence protein ComEA (RefSeq), at 2,928,413 to 2,928,712
_2489
Position (kb)
2926
2927
2928 Strain fitness (log2 ratio)
-2
-1
0
1 at 2926.763 kb on - strand, within Shew_2487 at 2926.770 kb on + strand, within Shew_2487 at 2927.129 kb on + strand, within Shew_2487 at 2927.340 kb on + strand, within Shew_2487 at 2927.348 kb on - strand, within Shew_2487 at 2928.448 kb on + strand, within Shew_2489 at 2928.456 kb on - strand, within Shew_2489
Per-strain Table
Position Strand Gene LocusTag Fraction succinate (C) remove 2,926,763 - Shew_2487 0.16 +0.5 2,926,770 + Shew_2487 0.17 +0.7 2,927,129 + Shew_2487 0.56 -0.4 2,927,340 + Shew_2487 0.80 +1.5 2,927,348 - Shew_2487 0.81 -2.0 2,928,448 + Shew_2489 0.12 +1.1 2,928,456 - Shew_2489 0.14 -0.0
Or see this region's nucleotide sequence