Strain Fitness in Shewanella loihica PV-4 around Shew_2372

Experiment: succinate (C)

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntShew_2371 and Shew_2372 are separated by 11 nucleotidesShew_2372 and Shew_2373 are separated by 299 nucleotides Shew_2371: Shew_2371 - actP-like component of L-lactate and L-malate uptake system (from data), at 2,772,719 to 2,774,437 _2371 Shew_2372: Shew_2372 - small component of L-lactate and L-malate uptake system (from data), at 2,774,449 to 2,774,715 _2372 Shew_2373: Shew_2373 - DSBA oxidoreductase (RefSeq), at 2,775,015 to 2,775,647 _2373 Position (kb) 2774 2775Strain fitness (log2 ratio) -3 -2 -1 0 1at 2773.707 kb on + strand, within Shew_2371at 2773.900 kb on - strand, within Shew_2371at 2774.095 kb on + strand, within Shew_2371at 2774.163 kb on - strand, within Shew_2371at 2774.542 kb on - strand, within Shew_2372at 2774.731 kb on - strandat 2774.772 kb on + strandat 2774.984 kb on + strandat 2775.213 kb on - strand, within Shew_2373at 2775.316 kb on - strand, within Shew_2373at 2775.562 kb on + strand, within Shew_2373at 2775.570 kb on - strand, within Shew_2373at 2775.570 kb on - strand, within Shew_2373

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Per-strain Table

Position Strand Gene LocusTag Fraction succinate (C)
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2,773,707 + Shew_2371 0.57 -3.6
2,773,900 - Shew_2371 0.69 -1.6
2,774,095 + Shew_2371 0.80 -0.7
2,774,163 - Shew_2371 0.84 -0.6
2,774,542 - Shew_2372 0.35 -1.2
2,774,731 - -1.4
2,774,772 + -3.6
2,774,984 + -1.2
2,775,213 - Shew_2373 0.31 -0.4
2,775,316 - Shew_2373 0.48 +0.1
2,775,562 + Shew_2373 0.86 -0.7
2,775,570 - Shew_2373 0.88 +1.2
2,775,570 - Shew_2373 0.88 +0.1

Or see this region's nucleotide sequence