Strain Fitness in Shewanella loihica PV-4 around Shew_1943

Experiment: succinate (C)

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntShew_1942 and Shew_1943 are separated by 123 nucleotidesShew_1943 and Shew_1944 are separated by 280 nucleotidesShew_1944 and nrdB overlap by 32 nucleotides Shew_1942: Shew_1942 - NADH:flavin oxidoreductase/NADH oxidase (RefSeq), at 2,242,810 to 2,244,825 _1942 Shew_1943: Shew_1943 - hypothetical protein (RefSeq), at 2,244,949 to 2,245,449 _1943 Shew_1944: Shew_1944 - ferredoxin (RefSeq), at 2,245,730 to 2,246,110 _1944 Shew_1945: nrdB - ribonucleotide-diphosphate reductase subunit beta (RefSeq), at 2,246,079 to 2,247,209 nrdB Position (kb) 2244 2245 2246Strain fitness (log2 ratio) -1 0 1at 2244.310 kb on + strand, within Shew_1942at 2244.535 kb on + strand, within Shew_1942at 2245.430 kb on - strand

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Per-strain Table

Position Strand Gene LocusTag Fraction succinate (C)
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2,244,310 + Shew_1942 0.74 +0.6
2,244,535 + Shew_1942 0.86 +0.9
2,245,430 - -1.2

Or see this region's nucleotide sequence