Strain Fitness in Shewanella loihica PV-4 around Shew_1881

Experiment: succinate (C)

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntShew_1879 and Shew_1880 are separated by 50 nucleotidesShew_1880 and Shew_1881 are separated by 192 nucleotidesShew_1881 and Shew_1882 are separated by 1 nucleotides Shew_1879: Shew_1879 - GCN5-related N-acetyltransferase (RefSeq), at 2,164,195 to 2,164,740 _1879 Shew_1880: Shew_1880 - hypothetical protein (RefSeq), at 2,164,791 to 2,165,231 _1880 Shew_1881: Shew_1881 - hypothetical protein (RefSeq), at 2,165,424 to 2,165,825 _1881 Shew_1882: Shew_1882 - metal dependent phosphohydrolase (RefSeq), at 2,165,827 to 2,167,113 _1882 Position (kb) 2165 2166Strain fitness (log2 ratio) -1 0 1 2at 2164.733 kb on + strandat 2164.944 kb on - strand, within Shew_1880at 2165.394 kb on + strandat 2165.573 kb on + strand, within Shew_1881at 2166.006 kb on - strand, within Shew_1882at 2166.262 kb on - strand, within Shew_1882at 2166.446 kb on + strand, within Shew_1882

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Per-strain Table

Position Strand Gene LocusTag Fraction succinate (C)
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2,164,733 + +0.4
2,164,944 - Shew_1880 0.35 +0.7
2,165,394 + -0.2
2,165,573 + Shew_1881 0.37 -1.6
2,166,006 - Shew_1882 0.14 +1.9
2,166,262 - Shew_1882 0.34 +0.6
2,166,446 + Shew_1882 0.48 +0.3

Or see this region's nucleotide sequence