Strain Fitness in Shewanella loihica PV-4 around Shew_1567

Experiment: succinate (C)

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntShew_1566 and Shew_1567 are separated by 219 nucleotidesShew_1567 and Shew_1568 are separated by 130 nucleotidesShew_1568 and aat overlap by 11 nucleotides Shew_1566: Shew_1566 - ATP-dependent Clp protease, ATP-binding subunit clpA (RefSeq), at 1,796,531 to 1,798,789 _1566 Shew_1567: Shew_1567 - translation initiation factor IF-1 (RefSeq), at 1,799,009 to 1,799,227 _1567 Shew_1568: Shew_1568 - arginyl-tRNA-protein transferase (RefSeq), at 1,799,358 to 1,800,062 _1568 Shew_1569: aat - leucyl/phenylalanyl-tRNA--protein transferase (RefSeq), at 1,800,052 to 1,800,762 aat Position (kb) 1799 1800Strain fitness (log2 ratio) -1 0 1at 1798.105 kb on + strand, within Shew_1566at 1798.107 kb on + strand, within Shew_1566at 1799.535 kb on - strand, within Shew_1568at 1799.535 kb on - strand, within Shew_1568at 1799.644 kb on - strand, within Shew_1568at 1799.763 kb on + strand, within Shew_1568at 1800.035 kb on + strand

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Per-strain Table

Position Strand Gene LocusTag Fraction succinate (C)
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1,798,105 + Shew_1566 0.70 -1.4
1,798,107 + Shew_1566 0.70 +0.6
1,799,535 - Shew_1568 0.25 +1.6
1,799,535 - Shew_1568 0.25 -0.2
1,799,644 - Shew_1568 0.41 +0.2
1,799,763 + Shew_1568 0.57 +1.0
1,800,035 + +1.2

Or see this region's nucleotide sequence