Experiment: succinate (C)
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt Shew_0678 and Shew_0679 are separated by 64 nucleotides Shew_0679 and Shew_0680 are separated by 87 nucleotides Shew_0680 and Shew_0681 are separated by 109 nucleotides
Shew_0678: Shew_0678 - protoporphyrinogen oxidase (RefSeq), at 772,995 to 773,516
_0678
Shew_0679: Shew_0679 - hypothetical protein (RefSeq), at 773,581 to 774,105
_0679
Shew_0680: Shew_0680 - LysR family transcriptional regulator (RefSeq), at 774,193 to 775,065
_0680
Shew_0681: Shew_0681 - penicillin V acylase-like protein (RefSeq), at 775,175 to 776,254
_0681
Position (kb) 774
775
776 Strain fitness (log2 ratio) -3
-2
-1
0
1
2 at 773.262 kb on - strand, within Shew_0678 at 773.262 kb on - strand, within Shew_0678 at 773.486 kb on + strand at 773.577 kb on - strand at 774.011 kb on + strand, within Shew_0679 at 774.011 kb on + strand, within Shew_0679 at 774.110 kb on + strand at 774.140 kb on - strand at 774.141 kb on - strand at 774.143 kb on + strand at 774.238 kb on + strand at 774.529 kb on + strand, within Shew_0680 at 774.613 kb on - strand, within Shew_0680 at 774.699 kb on + strand, within Shew_0680 at 774.755 kb on + strand, within Shew_0680 at 775.320 kb on - strand, within Shew_0681 at 775.402 kb on + strand, within Shew_0681 at 775.410 kb on - strand, within Shew_0681 at 775.450 kb on + strand, within Shew_0681 at 775.557 kb on - strand, within Shew_0681 at 775.711 kb on + strand, within Shew_0681 at 775.719 kb on - strand, within Shew_0681 at 775.779 kb on + strand, within Shew_0681 at 775.859 kb on - strand, within Shew_0681 at 775.929 kb on + strand, within Shew_0681 at 775.932 kb on - strand, within Shew_0681 at 776.042 kb on + strand, within Shew_0681
Per-strain Table
Position Strand Gene LocusTag Fraction succinate (C) remove 773,262 - Shew_0678 0.51 -0.9 773,262 - Shew_0678 0.51 -0.9 773,486 + +0.1 773,577 - +0.8 774,011 + Shew_0679 0.82 -1.8 774,011 + Shew_0679 0.82 -0.1 774,110 + +0.4 774,140 - -0.7 774,141 - -0.6 774,143 + +1.4 774,238 + +0.4 774,529 + Shew_0680 0.38 +0.4 774,613 - Shew_0680 0.48 -0.1 774,699 + Shew_0680 0.58 -0.4 774,755 + Shew_0680 0.64 -3.1 775,320 - Shew_0681 0.13 -0.4 775,402 + Shew_0681 0.21 -0.5 775,410 - Shew_0681 0.22 -0.0 775,450 + Shew_0681 0.25 -0.2 775,557 - Shew_0681 0.35 +1.3 775,711 + Shew_0681 0.50 -0.2 775,719 - Shew_0681 0.50 +2.0 775,779 + Shew_0681 0.56 +0.1 775,859 - Shew_0681 0.63 +0.2 775,929 + Shew_0681 0.70 +0.1 775,932 - Shew_0681 0.70 -2.4 776,042 + Shew_0681 0.80 -0.6
Or see this region's nucleotide sequence