Strain Fitness in Shewanella loihica PV-4 around Shew_0553

Experiment: succinate (C)

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntShew_0551 and Shew_0552 are separated by 77 nucleotidesShew_0552 and Shew_0553 are separated by 341 nucleotidesShew_0553 and Shew_0554 are separated by 494 nucleotides Shew_0551: Shew_0551 - DNA topoisomerase IV subunit A (RefSeq), at 621,922 to 624,189 _0551 Shew_0552: Shew_0552 - BFD/(2Fe-2S)-binding domain-containing protein (RefSeq), at 624,267 to 624,458 _0552 Shew_0553: Shew_0553 - D-isomer specific 2-hydroxyacid dehydrogenase, NAD-binding (RefSeq), at 624,800 to 625,726 _0553 Shew_0554: Shew_0554 - glycerophosphoryl diester phosphodiesterase (RefSeq), at 626,221 to 626,928 _0554 Position (kb) 624 625 626Strain fitness (log2 ratio) -1 0 1 2at 624.537 kb on - strandat 625.029 kb on - strand, within Shew_0553at 625.219 kb on - strand, within Shew_0553at 625.386 kb on - strand, within Shew_0553at 626.349 kb on - strand, within Shew_0554at 626.505 kb on + strand, within Shew_0554at 626.505 kb on + strand, within Shew_0554

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Per-strain Table

Position Strand Gene LocusTag Fraction succinate (C)
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624,537 - -0.3
625,029 - Shew_0553 0.25 +0.8
625,219 - Shew_0553 0.45 +0.0
625,386 - Shew_0553 0.63 +1.4
626,349 - Shew_0554 0.18 +1.0
626,505 + Shew_0554 0.40 +0.1
626,505 + Shew_0554 0.40 +2.1

Or see this region's nucleotide sequence