Experiment: succinate (C)
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt Shew_0497 and Shew_0498 are separated by 5 nucleotides Shew_0498 and Shew_0499 are separated by 145 nucleotides Shew_0499 and Shew_0500 are separated by 88 nucleotides
Shew_0497: Shew_0497 - putative sulfate transporter YchM (RefSeq), at 555,306 to 557,003
_0497
Shew_0498: Shew_0498 - flavoprotein oxygenase (RefSeq), at 557,009 to 557,638
_0498
Shew_0499: Shew_0499 - Xaa-Pro aminopeptidase family enzyme (RefSeq), at 557,784 to 559,136
_0499
Shew_0500: Shew_0500 - hypothetical protein (RefSeq), at 559,225 to 560,241
_0500
Position (kb) 557
558
559
560 Strain fitness (log2 ratio) -1
0
1 at 557.090 kb on - strand, within Shew_0498 at 557.102 kb on - strand, within Shew_0498 at 557.170 kb on + strand, within Shew_0498 at 557.178 kb on - strand, within Shew_0498 at 557.453 kb on + strand, within Shew_0498 at 557.885 kb on - strand at 558.001 kb on + strand, within Shew_0499 at 558.375 kb on - strand, within Shew_0499 at 558.403 kb on + strand, within Shew_0499 at 558.403 kb on + strand, within Shew_0499 at 558.403 kb on + strand, within Shew_0499 at 558.411 kb on - strand, within Shew_0499 at 558.608 kb on + strand, within Shew_0499 at 558.679 kb on + strand, within Shew_0499 at 559.472 kb on + strand, within Shew_0500 at 559.980 kb on - strand, within Shew_0500
Per-strain Table
Position Strand Gene LocusTag Fraction succinate (C) remove 557,090 - Shew_0498 0.13 +0.3 557,102 - Shew_0498 0.15 -0.1 557,170 + Shew_0498 0.26 -0.1 557,178 - Shew_0498 0.27 -0.8 557,453 + Shew_0498 0.70 -1.4 557,885 - +0.5 558,001 + Shew_0499 0.16 -0.5 558,375 - Shew_0499 0.44 -0.1 558,403 + Shew_0499 0.46 -0.1 558,403 + Shew_0499 0.46 -0.8 558,403 + Shew_0499 0.46 -0.9 558,411 - Shew_0499 0.46 +0.0 558,608 + Shew_0499 0.61 +0.4 558,679 + Shew_0499 0.66 +0.2 559,472 + Shew_0500 0.24 +1.1 559,980 - Shew_0500 0.74 +0.2
Or see this region's nucleotide sequence