Experiment: succinate (C)
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt Shew_0395 and Shew_0396 are separated by 89 nucleotides Shew_0396 and Shew_0397 are separated by 14 nucleotides Shew_0397 and Shew_0398 are separated by 146 nucleotides Shew_0398 and Shew_0399 overlap by 11 nucleotides
Shew_0395: Shew_0395 - methylation site containing protein (RefSeq), at 446,032 to 446,667
_0395
Shew_0396: Shew_0396 - methylation site containing protein (RefSeq), at 446,757 to 447,266
_0396
Shew_0397: Shew_0397 - methylation site containing protein (RefSeq), at 447,281 to 447,772
_0397
Shew_0398: Shew_0398 - MSHA pilin protein MshC (RefSeq), at 447,919 to 448,368
_0398
Shew_0399: Shew_0399 - methylation site containing protein (RefSeq), at 448,358 to 448,909
_0399
Position (kb) 447
448 Strain fitness (log2 ratio) -3
-2
-1
0
1
2 at 446.335 kb on + strand, within Shew_0395 at 446.641 kb on + strand at 446.781 kb on - strand at 447.023 kb on - strand, within Shew_0396 at 447.033 kb on - strand, within Shew_0396 at 447.144 kb on - strand, within Shew_0396 at 447.229 kb on + strand at 447.548 kb on + strand, within Shew_0397 at 447.785 kb on + strand at 447.793 kb on - strand at 448.031 kb on + strand, within Shew_0398 at 448.039 kb on - strand, within Shew_0398 at 448.398 kb on + strand at 448.533 kb on + strand, within Shew_0399 at 448.648 kb on + strand, within Shew_0399 at 448.661 kb on - strand, within Shew_0399 at 448.661 kb on - strand, within Shew_0399 at 448.727 kb on - strand, within Shew_0399 at 448.743 kb on - strand, within Shew_0399
Per-strain Table
Position Strand Gene LocusTag Fraction succinate (C) remove 446,335 + Shew_0395 0.48 +0.5 446,641 + +1.9 446,781 - -2.5 447,023 - Shew_0396 0.52 +1.3 447,033 - Shew_0396 0.54 -1.9 447,144 - Shew_0396 0.76 -2.9 447,229 + -0.3 447,548 + Shew_0397 0.54 +0.0 447,785 + -0.1 447,793 - +0.4 448,031 + Shew_0398 0.25 -0.1 448,039 - Shew_0398 0.27 -0.9 448,398 + -0.3 448,533 + Shew_0399 0.32 +0.7 448,648 + Shew_0399 0.53 +0.5 448,661 - Shew_0399 0.55 +0.6 448,661 - Shew_0399 0.55 -0.4 448,727 - Shew_0399 0.67 +0.1 448,743 - Shew_0399 0.70 -0.9
Or see this region's nucleotide sequence