Experiment: succinate (C)
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt prmA and Shew_0332 are separated by 346 nucleotides Shew_0332 and Shew_0333 are separated by 144 nucleotides Shew_0333 and Shew_0334 are separated by 46 nucleotides
Shew_0331: prmA - ribosomal protein L11 methyltransferase (RefSeq), at 375,851 to 376,732
prmA
Shew_0332: Shew_0332 - fumarate reductase cytochrome b-556 subunit (RefSeq), at 377,079 to 377,801
_0332
Shew_0333: Shew_0333 - fumarate reductase respiratory complex, transmembrane subunit (RefSeq), at 377,946 to 378,617
_0333
Shew_0334: Shew_0334 - fumarate reductase flavoprotein subunit (RefSeq), at 378,664 to 380,670
_0334
Position (kb) 377
378 Strain fitness (log2 ratio) -1
0
1
2 at 376.177 kb on - strand, within prmA at 376.548 kb on + strand, within prmA at 376.608 kb on - strand, within prmA at 376.641 kb on - strand, within prmA at 377.129 kb on - strand at 377.129 kb on - strand at 377.256 kb on + strand, within Shew_0332 at 377.292 kb on + strand, within Shew_0332 at 377.292 kb on + strand, within Shew_0332 at 377.300 kb on - strand, within Shew_0332 at 377.300 kb on - strand, within Shew_0332 at 377.646 kb on + strand, within Shew_0332 at 377.812 kb on - strand at 378.023 kb on - strand, within Shew_0333 at 378.037 kb on - strand, within Shew_0333 at 378.047 kb on - strand, within Shew_0333 at 378.047 kb on - strand, within Shew_0333 at 378.416 kb on + strand, within Shew_0333 at 378.576 kb on + strand at 378.576 kb on + strand at 378.771 kb on + strand
Per-strain Table
Position Strand Gene LocusTag Fraction succinate (C) remove 376,177 - prmA Shew_0331 0.37 +0.3 376,548 + prmA Shew_0331 0.79 -0.2 376,608 - prmA Shew_0331 0.86 +0.2 376,641 - prmA Shew_0331 0.90 -0.4 377,129 - +1.3 377,129 - +0.4 377,256 + Shew_0332 0.24 +0.6 377,292 + Shew_0332 0.29 +1.0 377,292 + Shew_0332 0.29 +0.8 377,300 - Shew_0332 0.31 +0.3 377,300 - Shew_0332 0.31 -0.1 377,646 + Shew_0332 0.78 +0.9 377,812 - +0.0 378,023 - Shew_0333 0.11 +0.3 378,037 - Shew_0333 0.14 +0.2 378,047 - Shew_0333 0.15 +0.2 378,047 - Shew_0333 0.15 +1.7 378,416 + Shew_0333 0.70 -1.0 378,576 + +0.7 378,576 + +1.9 378,771 + -0.1
Or see this region's nucleotide sequence