Strain Fitness in Shewanella loihica PV-4 around Shew_0292

Experiment: succinate (C)

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntShew_0291 and Shew_0292 are separated by 112 nucleotidesShew_0292 and Shew_0293 are separated by 1 nucleotides Shew_0291: Shew_0291 - branched-chain amino acid aminotransferase (RefSeq), at 310,509 to 311,432 _0291 Shew_0292: Shew_0292 - dihydroxy-acid dehydratase (RefSeq), at 311,545 to 313,395 _0292 Shew_0293: Shew_0293 - threonine dehydratase (RefSeq), at 313,397 to 314,947 _0293 Position (kb) 311 312 313 314Strain fitness (log2 ratio) -7 -6 -5 -4 -3 -2 -1 0 1at 310.655 kb on + strand, within Shew_0291at 311.098 kb on + strand, within Shew_0291at 311.106 kb on - strand, within Shew_0291at 311.129 kb on + strand, within Shew_0291at 311.137 kb on - strand, within Shew_0291at 311.137 kb on - strand, within Shew_0291at 311.137 kb on - strand, within Shew_0291at 311.137 kb on - strand, within Shew_0291at 311.424 kb on - strandat 311.424 kb on - strandat 311.459 kb on + strandat 311.669 kb on + strandat 311.763 kb on + strand, within Shew_0292at 311.814 kb on + strand, within Shew_0292at 311.814 kb on + strand, within Shew_0292at 311.831 kb on + strand, within Shew_0292at 311.934 kb on - strand, within Shew_0292at 312.076 kb on + strand, within Shew_0292at 312.166 kb on + strand, within Shew_0292at 312.326 kb on + strand, within Shew_0292at 312.334 kb on - strand, within Shew_0292at 312.456 kb on + strand, within Shew_0292at 312.477 kb on + strand, within Shew_0292at 312.477 kb on + strand, within Shew_0292at 312.548 kb on + strand, within Shew_0292at 312.564 kb on - strand, within Shew_0292at 312.564 kb on - strand, within Shew_0292at 312.877 kb on + strand, within Shew_0292at 312.877 kb on + strand, within Shew_0292at 312.996 kb on - strand, within Shew_0292at 313.214 kb on + strandat 313.244 kb on - strandat 313.263 kb on + strandat 313.575 kb on + strand, within Shew_0293at 313.575 kb on + strand, within Shew_0293at 313.575 kb on + strand, within Shew_0293at 313.575 kb on + strand, within Shew_0293at 313.575 kb on + strand, within Shew_0293at 313.575 kb on + strand, within Shew_0293at 313.575 kb on + strand, within Shew_0293at 313.575 kb on + strand, within Shew_0293at 313.575 kb on + strand, within Shew_0293at 313.575 kb on + strand, within Shew_0293at 313.583 kb on - strand, within Shew_0293at 313.583 kb on - strand, within Shew_0293at 313.583 kb on - strand, within Shew_0293at 313.583 kb on - strand, within Shew_0293at 313.593 kb on - strand, within Shew_0293at 313.724 kb on + strand, within Shew_0293at 313.724 kb on + strand, within Shew_0293at 313.732 kb on - strand, within Shew_0293at 313.894 kb on + strand, within Shew_0293at 313.902 kb on - strand, within Shew_0293at 313.953 kb on - strand, within Shew_0293at 314.003 kb on + strand, within Shew_0293at 314.066 kb on - strand, within Shew_0293at 314.298 kb on - strand, within Shew_0293

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Per-strain Table

Position Strand Gene LocusTag Fraction succinate (C)
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310,655 + Shew_0291 0.16 -2.2
311,098 + Shew_0291 0.64 -2.5
311,106 - Shew_0291 0.65 -5.2
311,129 + Shew_0291 0.67 -2.1
311,137 - Shew_0291 0.68 -4.7
311,137 - Shew_0291 0.68 -5.3
311,137 - Shew_0291 0.68 -6.9
311,137 - Shew_0291 0.68 -3.8
311,424 - -2.8
311,424 - -3.2
311,459 + -0.6
311,669 + -4.3
311,763 + Shew_0292 0.12 -4.5
311,814 + Shew_0292 0.15 -5.5
311,814 + Shew_0292 0.15 -3.4
311,831 + Shew_0292 0.15 -6.3
311,934 - Shew_0292 0.21 -7.1
312,076 + Shew_0292 0.29 -1.2
312,166 + Shew_0292 0.34 -2.6
312,326 + Shew_0292 0.42 -5.0
312,334 - Shew_0292 0.43 -2.9
312,456 + Shew_0292 0.49 -4.8
312,477 + Shew_0292 0.50 -6.7
312,477 + Shew_0292 0.50 -6.9
312,548 + Shew_0292 0.54 -4.7
312,564 - Shew_0292 0.55 -1.9
312,564 - Shew_0292 0.55 -3.7
312,877 + Shew_0292 0.72 -4.3
312,877 + Shew_0292 0.72 -6.7
312,996 - Shew_0292 0.78 -4.4
313,214 + -4.8
313,244 - -6.0
313,263 + -4.3
313,575 + Shew_0293 0.11 -7.0
313,575 + Shew_0293 0.11 -5.3
313,575 + Shew_0293 0.11 -5.4
313,575 + Shew_0293 0.11 -3.7
313,575 + Shew_0293 0.11 -5.4
313,575 + Shew_0293 0.11 -6.2
313,575 + Shew_0293 0.11 -7.4
313,575 + Shew_0293 0.11 -5.5
313,575 + Shew_0293 0.11 -5.9
313,575 + Shew_0293 0.11 -3.6
313,583 - Shew_0293 0.12 -0.6
313,583 - Shew_0293 0.12 -4.5
313,583 - Shew_0293 0.12 -3.2
313,583 - Shew_0293 0.12 -2.4
313,593 - Shew_0293 0.13 -1.9
313,724 + Shew_0293 0.21 -5.5
313,724 + Shew_0293 0.21 -4.3
313,732 - Shew_0293 0.22 -2.9
313,894 + Shew_0293 0.32 -5.5
313,902 - Shew_0293 0.33 -4.3
313,953 - Shew_0293 0.36 -7.0
314,003 + Shew_0293 0.39 -5.8
314,066 - Shew_0293 0.43 -5.5
314,298 - Shew_0293 0.58 -6.4

Or see this region's nucleotide sequence