Experiment: succinate (C)
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt Shew_0271 and Shew_0272 are separated by 52 nucleotides Shew_0272 and Shew_0273 are separated by 171 nucleotides Shew_0273 and Shew_0274 are separated by 167 nucleotides
Shew_0271: Shew_0271 - phospholipase (RefSeq), at 287,658 to 289,007
_0271
Shew_0272: Shew_0272 - cupin 2 domain-containing protein (RefSeq), at 289,060 to 289,803
_0272
Shew_0273: Shew_0273 - hypothetical protein (RefSeq), at 289,975 to 291,039
_0273
Shew_0274: Shew_0274 - hypothetical protein (RefSeq), at 291,207 to 292,340
_0274
Position (kb) 289
290
291
292 Strain fitness (log2 ratio) -5
-4
-3
-2
-1
0
1
2 at 289.103 kb on - strand at 289.135 kb on + strand, within Shew_0272 at 289.335 kb on + strand, within Shew_0272 at 289.336 kb on + strand, within Shew_0272 at 289.431 kb on + strand, within Shew_0272 at 289.644 kb on + strand, within Shew_0272 at 290.356 kb on - strand, within Shew_0273 at 290.399 kb on - strand, within Shew_0273 at 290.507 kb on + strand, within Shew_0273 at 290.551 kb on - strand, within Shew_0273 at 290.601 kb on + strand, within Shew_0273 at 290.668 kb on + strand, within Shew_0273 at 290.696 kb on - strand, within Shew_0273 at 290.710 kb on - strand, within Shew_0273 at 290.809 kb on - strand, within Shew_0273 at 290.847 kb on - strand, within Shew_0273 at 290.964 kb on + strand at 290.964 kb on + strand at 290.972 kb on - strand at 291.057 kb on + strand at 291.440 kb on + strand, within Shew_0274 at 291.511 kb on + strand, within Shew_0274 at 291.530 kb on + strand, within Shew_0274 at 291.633 kb on + strand, within Shew_0274 at 291.701 kb on - strand, within Shew_0274 at 291.748 kb on - strand, within Shew_0274 at 291.873 kb on + strand, within Shew_0274 at 291.873 kb on + strand, within Shew_0274 at 291.873 kb on + strand, within Shew_0274 at 291.881 kb on - strand, within Shew_0274 at 291.881 kb on - strand, within Shew_0274
Per-strain Table
Position Strand Gene LocusTag Fraction succinate (C) remove 289,103 - -0.0 289,135 + Shew_0272 0.10 +0.2 289,335 + Shew_0272 0.37 -0.0 289,336 + Shew_0272 0.37 +0.2 289,431 + Shew_0272 0.50 +1.6 289,644 + Shew_0272 0.78 +0.4 290,356 - Shew_0273 0.36 +0.3 290,399 - Shew_0273 0.40 -0.0 290,507 + Shew_0273 0.50 -1.8 290,551 - Shew_0273 0.54 +0.1 290,601 + Shew_0273 0.59 -0.2 290,668 + Shew_0273 0.65 -0.5 290,696 - Shew_0273 0.68 -0.3 290,710 - Shew_0273 0.69 -1.6 290,809 - Shew_0273 0.78 -1.9 290,847 - Shew_0273 0.82 +0.6 290,964 + -1.6 290,964 + -3.1 290,972 - -0.8 291,057 + +1.2 291,440 + Shew_0274 0.21 +0.1 291,511 + Shew_0274 0.27 +0.4 291,530 + Shew_0274 0.28 -0.3 291,633 + Shew_0274 0.38 -0.3 291,701 - Shew_0274 0.44 -5.1 291,748 - Shew_0274 0.48 +1.4 291,873 + Shew_0274 0.59 +2.4 291,873 + Shew_0274 0.59 -0.6 291,873 + Shew_0274 0.59 -1.2 291,881 - Shew_0274 0.59 +1.2 291,881 - Shew_0274 0.59 +1.4
Or see this region's nucleotide sequence