Experiment: succinate (C)
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt Shew_0269 and Shew_0270 are separated by 68 nucleotides Shew_0270 and Shew_0271 are separated by 140 nucleotides Shew_0271 and Shew_0272 are separated by 52 nucleotides Shew_0272 and Shew_0273 are separated by 171 nucleotides
Shew_0269: Shew_0269 - hypothetical protein (RefSeq), at 285,926 to 286,813
_0269
Shew_0270: Shew_0270 - hypothetical protein (RefSeq), at 286,882 to 287,517
_0270
Shew_0271: Shew_0271 - phospholipase (RefSeq), at 287,658 to 289,007
_0271
Shew_0272: Shew_0272 - cupin 2 domain-containing protein (RefSeq), at 289,060 to 289,803
_0272
Shew_0273: Shew_0273 - hypothetical protein (RefSeq), at 289,975 to 291,039
_0273
Position (kb) 287
288
289
290 Strain fitness (log2 ratio) -1
0
1
2
3 at 287.616 kb on + strand at 287.697 kb on + strand at 287.697 kb on + strand at 287.705 kb on - strand at 287.737 kb on - strand at 288.093 kb on - strand, within Shew_0271 at 288.093 kb on - strand, within Shew_0271 at 288.093 kb on - strand, within Shew_0271 at 288.098 kb on - strand, within Shew_0271 at 288.167 kb on - strand, within Shew_0271 at 288.502 kb on + strand, within Shew_0271 at 288.510 kb on - strand, within Shew_0271 at 288.510 kb on - strand, within Shew_0271 at 288.510 kb on - strand, within Shew_0271 at 288.778 kb on - strand, within Shew_0271 at 288.892 kb on - strand at 288.946 kb on + strand at 289.103 kb on - strand at 289.135 kb on + strand, within Shew_0272 at 289.335 kb on + strand, within Shew_0272 at 289.336 kb on + strand, within Shew_0272 at 289.431 kb on + strand, within Shew_0272 at 289.644 kb on + strand, within Shew_0272
Per-strain Table
Position Strand Gene LocusTag Fraction succinate (C) remove 287,616 + +1.3 287,697 + +1.7 287,697 + +1.5 287,705 - +1.1 287,737 - +1.9 288,093 - Shew_0271 0.32 +2.3 288,093 - Shew_0271 0.32 +1.7 288,093 - Shew_0271 0.32 +1.2 288,098 - Shew_0271 0.33 +1.3 288,167 - Shew_0271 0.38 +1.1 288,502 + Shew_0271 0.63 +3.0 288,510 - Shew_0271 0.63 +1.8 288,510 - Shew_0271 0.63 +0.4 288,510 - Shew_0271 0.63 +1.8 288,778 - Shew_0271 0.83 +1.5 288,892 - +2.9 288,946 + +0.2 289,103 - -0.0 289,135 + Shew_0272 0.10 +0.2 289,335 + Shew_0272 0.37 -0.0 289,336 + Shew_0272 0.37 +0.2 289,431 + Shew_0272 0.50 +1.6 289,644 + Shew_0272 0.78 +0.4
Or see this region's nucleotide sequence