Experiment: succinate (C)
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt Shew_0111 and Shew_0112 are separated by 22 nucleotides Shew_0112 and Shew_0113 are separated by 28 nucleotides Shew_0113 and Shew_0114 are separated by 21 nucleotides Shew_0114 and Shew_0115 overlap by 4 nucleotides Shew_0115 and Shew_0116 are separated by 163 nucleotides
Shew_0111: Shew_0111 - methyl-accepting chemotaxis sensory transducer with Pas/Pac sensor (RefSeq), at 121,633 to 124,227
_0111
Shew_0112: Shew_0112 - CheW protein (RefSeq), at 124,250 to 124,807
_0112
Shew_0113: Shew_0113 - CheA signal transduction histidine kinase (RefSeq), at 124,836 to 126,896
_0113
Shew_0114: Shew_0114 - response regulator receiver protein (RefSeq), at 126,918 to 127,280
_0114
Shew_0115: Shew_0115 - hypothetical protein (RefSeq), at 127,277 to 127,576
_0115
Shew_0116: Shew_0116 - electron transport protein SCO1/SenC (RefSeq), at 127,740 to 128,375
_0116
Position (kb) 124
125
126
127 Strain fitness (log2 ratio) -3
-2
-1
0
1 at 123.898 kb on - strand, within Shew_0111 at 123.898 kb on - strand, within Shew_0111 at 123.898 kb on - strand, within Shew_0111 at 123.933 kb on + strand, within Shew_0111 at 123.935 kb on + strand, within Shew_0111 at 124.276 kb on - strand at 124.400 kb on - strand, within Shew_0112 at 124.439 kb on + strand, within Shew_0112 at 124.454 kb on - strand, within Shew_0112 at 124.733 kb on + strand, within Shew_0112 at 125.225 kb on + strand, within Shew_0113 at 125.225 kb on + strand, within Shew_0113 at 125.225 kb on + strand, within Shew_0113 at 125.227 kb on + strand, within Shew_0113 at 125.227 kb on + strand, within Shew_0113 at 125.233 kb on - strand, within Shew_0113 at 125.235 kb on - strand, within Shew_0113 at 125.308 kb on + strand, within Shew_0113 at 125.308 kb on + strand, within Shew_0113 at 125.316 kb on - strand, within Shew_0113 at 125.316 kb on - strand, within Shew_0113 at 125.338 kb on - strand, within Shew_0113 at 125.408 kb on - strand, within Shew_0113 at 125.526 kb on + strand, within Shew_0113 at 125.651 kb on - strand, within Shew_0113 at 125.656 kb on - strand, within Shew_0113 at 125.847 kb on + strand, within Shew_0113 at 126.187 kb on + strand, within Shew_0113 at 126.223 kb on + strand, within Shew_0113 at 126.485 kb on + strand, within Shew_0113 at 126.551 kb on + strand, within Shew_0113 at 126.842 kb on + strand at 126.921 kb on + strand at 126.921 kb on + strand at 126.974 kb on - strand, within Shew_0114 at 127.124 kb on + strand, within Shew_0114 at 127.207 kb on - strand, within Shew_0114 at 127.228 kb on - strand, within Shew_0114 at 127.350 kb on - strand, within Shew_0115 at 127.817 kb on + strand, within Shew_0116 at 127.874 kb on - strand, within Shew_0116
Per-strain Table
Position Strand Gene LocusTag Fraction succinate (C) remove 123,898 - Shew_0111 0.87 -0.1 123,898 - Shew_0111 0.87 -0.6 123,898 - Shew_0111 0.87 +0.1 123,933 + Shew_0111 0.89 +0.1 123,935 + Shew_0111 0.89 -1.9 124,276 - -1.0 124,400 - Shew_0112 0.27 +0.4 124,439 + Shew_0112 0.34 -1.5 124,454 - Shew_0112 0.37 -2.2 124,733 + Shew_0112 0.87 -1.0 125,225 + Shew_0113 0.19 -0.4 125,225 + Shew_0113 0.19 +0.7 125,225 + Shew_0113 0.19 +0.2 125,227 + Shew_0113 0.19 -2.3 125,227 + Shew_0113 0.19 -1.1 125,233 - Shew_0113 0.19 +0.1 125,235 - Shew_0113 0.19 +0.3 125,308 + Shew_0113 0.23 +0.3 125,308 + Shew_0113 0.23 +1.4 125,316 - Shew_0113 0.23 -2.5 125,316 - Shew_0113 0.23 -0.6 125,338 - Shew_0113 0.24 +0.4 125,408 - Shew_0113 0.28 -0.0 125,526 + Shew_0113 0.33 -0.2 125,651 - Shew_0113 0.40 +0.2 125,656 - Shew_0113 0.40 +0.5 125,847 + Shew_0113 0.49 +0.6 126,187 + Shew_0113 0.66 +0.9 126,223 + Shew_0113 0.67 -0.8 126,485 + Shew_0113 0.80 +1.0 126,551 + Shew_0113 0.83 -1.5 126,842 + -0.5 126,921 + -0.4 126,921 + -3.1 126,974 - Shew_0114 0.15 -1.1 127,124 + Shew_0114 0.57 -1.9 127,207 - Shew_0114 0.80 +0.7 127,228 - Shew_0114 0.85 -0.1 127,350 - Shew_0115 0.24 -0.2 127,817 + Shew_0116 0.12 -2.0 127,874 - Shew_0116 0.21 -3.2
Or see this region's nucleotide sequence