Experiment: succinate (C)
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt Shew_0083 and Shew_0084 are separated by 81 nucleotides Shew_0084 and Shew_0085 are separated by 75 nucleotides Shew_0085 and Shew_0086 are separated by 260 nucleotides
Shew_0083: Shew_0083 - MOSC domain-containing protein (RefSeq), at 96,244 to 96,936
_0083
Shew_0084: Shew_0084 - hypothetical protein (RefSeq), at 97,018 to 97,338
_0084
Shew_0085: Shew_0085 - methyl-accepting chemotaxis sensory transducer (RefSeq), at 97,414 to 99,330
_0085
Shew_0086: Shew_0086 - electron-transferring-flavoproteindehydrogenase (RefSeq), at 99,591 to 101,240
_0086
Position (kb) 97
98
99
100 Strain fitness (log2 ratio) -2
-1
0
1
2
3
4 at 96.658 kb on + strand, within Shew_0083 at 96.747 kb on - strand, within Shew_0083 at 96.763 kb on - strand, within Shew_0083 at 96.805 kb on - strand, within Shew_0083 at 97.217 kb on + strand, within Shew_0084 at 97.410 kb on - strand at 97.420 kb on - strand at 97.499 kb on - strand at 97.644 kb on + strand, within Shew_0085 at 97.644 kb on + strand, within Shew_0085 at 97.652 kb on - strand, within Shew_0085 at 97.833 kb on - strand, within Shew_0085 at 97.901 kb on + strand, within Shew_0085 at 98.288 kb on + strand, within Shew_0085 at 98.358 kb on + strand, within Shew_0085 at 98.398 kb on - strand, within Shew_0085 at 98.457 kb on - strand, within Shew_0085 at 98.459 kb on + strand, within Shew_0085 at 98.467 kb on - strand, within Shew_0085 at 98.510 kb on + strand, within Shew_0085 at 98.584 kb on + strand, within Shew_0085 at 98.628 kb on + strand, within Shew_0085 at 98.834 kb on - strand, within Shew_0085 at 99.029 kb on + strand, within Shew_0085 at 99.037 kb on - strand, within Shew_0085 at 99.117 kb on + strand, within Shew_0085 at 99.135 kb on + strand, within Shew_0085 at 99.179 kb on + strand at 99.179 kb on - strand at 99.179 kb on + strand at 99.210 kb on + strand at 99.293 kb on - strand at 99.352 kb on - strand at 99.352 kb on - strand at 99.352 kb on - strand at 99.363 kb on + strand at 99.365 kb on + strand at 99.417 kb on + strand at 99.640 kb on + strand at 99.757 kb on + strand, within Shew_0086 at 99.813 kb on - strand, within Shew_0086 at 99.814 kb on - strand, within Shew_0086 at 99.830 kb on + strand, within Shew_0086 at 100.019 kb on - strand, within Shew_0086 at 100.115 kb on + strand, within Shew_0086 at 100.145 kb on - strand, within Shew_0086 at 100.209 kb on + strand, within Shew_0086 at 100.228 kb on + strand, within Shew_0086 at 100.245 kb on + strand, within Shew_0086 at 100.253 kb on - strand, within Shew_0086 at 100.294 kb on + strand, within Shew_0086 at 100.326 kb on - strand, within Shew_0086 at 100.326 kb on - strand, within Shew_0086
Per-strain Table
Position Strand Gene LocusTag Fraction succinate (C) remove 96,658 + Shew_0083 0.60 -0.4 96,747 - Shew_0083 0.73 +0.6 96,763 - Shew_0083 0.75 +0.0 96,805 - Shew_0083 0.81 +0.5 97,217 + Shew_0084 0.62 +0.5 97,410 - -1.1 97,420 - +3.8 97,499 - +0.6 97,644 + Shew_0085 0.12 -2.1 97,644 + Shew_0085 0.12 -2.0 97,652 - Shew_0085 0.12 +0.5 97,833 - Shew_0085 0.22 +0.7 97,901 + Shew_0085 0.25 +0.4 98,288 + Shew_0085 0.46 +0.4 98,358 + Shew_0085 0.49 +0.5 98,398 - Shew_0085 0.51 +0.6 98,457 - Shew_0085 0.54 +0.3 98,459 + Shew_0085 0.55 -0.1 98,467 - Shew_0085 0.55 -0.1 98,510 + Shew_0085 0.57 +0.1 98,584 + Shew_0085 0.61 +0.4 98,628 + Shew_0085 0.63 -0.6 98,834 - Shew_0085 0.74 +0.1 99,029 + Shew_0085 0.84 -0.1 99,037 - Shew_0085 0.85 +0.4 99,117 + Shew_0085 0.89 -0.7 99,135 + Shew_0085 0.90 +0.9 99,179 + +1.3 99,179 - +0.5 99,179 + +1.3 99,210 + +0.3 99,293 - -0.1 99,352 - +0.3 99,352 - -0.6 99,352 - +1.7 99,363 + -0.0 99,365 + +0.0 99,417 + +0.0 99,640 + +2.7 99,757 + Shew_0086 0.10 +1.7 99,813 - Shew_0086 0.13 +1.4 99,814 - Shew_0086 0.14 +1.8 99,830 + Shew_0086 0.14 +1.4 100,019 - Shew_0086 0.26 +1.5 100,115 + Shew_0086 0.32 +1.4 100,145 - Shew_0086 0.34 +1.4 100,209 + Shew_0086 0.37 +1.0 100,228 + Shew_0086 0.39 +1.3 100,245 + Shew_0086 0.40 +1.1 100,253 - Shew_0086 0.40 +1.7 100,294 + Shew_0086 0.43 +1.1 100,326 - Shew_0086 0.45 +1.9 100,326 - Shew_0086 0.45 +1.6
Or see this region's nucleotide sequence