Experiment: succinate (C)
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt Shew_0071 and Shew_0072 are separated by 7 nucleotides Shew_0072 and Shew_0073 are separated by 373 nucleotides Shew_0073 and Shew_0074 are separated by 99 nucleotides Shew_0074 and Shew_0075 overlap by 4 nucleotides
Shew_0071: Shew_0071 - AraC family transcriptional regulator (RefSeq), at 85,050 to 85,916
_0071
Shew_0072: Shew_0072 - hypothetical protein (RefSeq), at 85,924 to 86,445
_0072
Shew_0073: Shew_0073 - coproporphyrinogen III oxidase (RefSeq), at 86,819 to 88,162
_0073
Shew_0074: Shew_0074 - no description, at 88,262 to 88,885
_0074
Shew_0075: Shew_0075 - hypothetical protein (RefSeq), at 88,882 to 89,097
_0075
Position (kb) 86
87
88
89 Strain fitness (log2 ratio) -2
-1
0
1 at 85.894 kb on + strand at 86.224 kb on + strand, within Shew_0072 at 86.231 kb on + strand, within Shew_0072 at 86.231 kb on + strand, within Shew_0072 at 86.231 kb on + strand, within Shew_0072 at 86.231 kb on + strand, within Shew_0072 at 86.231 kb on + strand, within Shew_0072 at 86.234 kb on - strand, within Shew_0072 at 86.239 kb on - strand, within Shew_0072 at 86.292 kb on + strand, within Shew_0072 at 86.389 kb on + strand, within Shew_0072 at 86.676 kb on - strand at 86.823 kb on - strand at 86.869 kb on + strand at 86.882 kb on - strand at 86.929 kb on + strand at 86.929 kb on + strand at 86.929 kb on + strand at 86.937 kb on - strand at 87.033 kb on + strand, within Shew_0073 at 87.041 kb on - strand, within Shew_0073 at 87.296 kb on - strand, within Shew_0073 at 87.296 kb on - strand, within Shew_0073 at 87.302 kb on - strand, within Shew_0073 at 87.608 kb on + strand, within Shew_0073 at 87.641 kb on + strand, within Shew_0073 at 87.801 kb on + strand, within Shew_0073 at 88.106 kb on + strand at 88.114 kb on - strand at 88.122 kb on + strand at 88.167 kb on + strand at 88.526 kb on + strand, within Shew_0074 at 88.665 kb on + strand, within Shew_0074 at 88.665 kb on + strand, within Shew_0074 at 88.673 kb on - strand, within Shew_0074 at 88.673 kb on - strand, within Shew_0074 at 88.673 kb on - strand, within Shew_0074 at 88.673 kb on - strand, within Shew_0074 at 88.755 kb on + strand, within Shew_0074 at 88.847 kb on + strand at 89.081 kb on - strand at 89.113 kb on - strand
Per-strain Table
Position Strand Gene LocusTag Fraction succinate (C) remove 85,894 + +1.3 86,224 + Shew_0072 0.57 -2.4 86,231 + Shew_0072 0.59 -2.5 86,231 + Shew_0072 0.59 -1.1 86,231 + Shew_0072 0.59 +1.7 86,231 + Shew_0072 0.59 +1.6 86,231 + Shew_0072 0.59 +0.6 86,234 - Shew_0072 0.59 -1.4 86,239 - Shew_0072 0.60 -0.3 86,292 + Shew_0072 0.70 +0.6 86,389 + Shew_0072 0.89 -1.2 86,676 - +0.2 86,823 - -0.4 86,869 + +0.2 86,882 - -0.2 86,929 + -1.2 86,929 + -0.2 86,929 + +0.3 86,937 - +0.1 87,033 + Shew_0073 0.16 +0.5 87,041 - Shew_0073 0.17 +0.1 87,296 - Shew_0073 0.35 -0.4 87,296 - Shew_0073 0.35 +0.7 87,302 - Shew_0073 0.36 +0.9 87,608 + Shew_0073 0.59 +0.4 87,641 + Shew_0073 0.61 +0.7 87,801 + Shew_0073 0.73 +0.7 88,106 + +0.0 88,114 - -0.8 88,122 + +0.2 88,167 + +0.3 88,526 + Shew_0074 0.42 +0.2 88,665 + Shew_0074 0.65 -0.0 88,665 + Shew_0074 0.65 +0.4 88,673 - Shew_0074 0.66 +0.9 88,673 - Shew_0074 0.66 +0.8 88,673 - Shew_0074 0.66 +0.1 88,673 - Shew_0074 0.66 +0.9 88,755 + Shew_0074 0.79 +0.4 88,847 + +0.6 89,081 - +0.0 89,113 - +0.9
Or see this region's nucleotide sequence