Experiment: succinate (C)
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt Shew_0020 and Shew_0021 are separated by 14 nucleotides Shew_0021 and Shew_0022 are separated by 152 nucleotides Shew_0022 and Shew_0023 overlap by 1 nucleotides Shew_0023 and Shew_0024 are separated by 21 nucleotides
Shew_0020: Shew_0020 - proline dipeptidase (RefSeq), at 23,495 to 24,817
_0020
Shew_0021: Shew_0021 - hypothetical protein (RefSeq), at 24,832 to 25,446
_0021
Shew_0022: Shew_0022 - TrkH family potassium uptake protein (RefSeq), at 25,599 to 27,056
_0022
Shew_0023: Shew_0023 - protoporphyrinogen oxidase (RefSeq), at 27,056 to 27,583
_0023
Shew_0024: Shew_0024 - ArsR family transcriptional regulator (RefSeq), at 27,605 to 27,910
_0024
Position (kb) 25
26
27
28 Strain fitness (log2 ratio) -3
-2
-1
0
1 at 24.811 kb on - strand at 25.148 kb on + strand, within Shew_0021 at 25.223 kb on - strand, within Shew_0021 at 25.227 kb on + strand, within Shew_0021 at 25.283 kb on - strand, within Shew_0021 at 25.307 kb on + strand, within Shew_0021 at 25.365 kb on + strand, within Shew_0021 at 25.375 kb on + strand, within Shew_0021 at 25.375 kb on + strand, within Shew_0021 at 25.418 kb on - strand at 25.462 kb on - strand at 25.795 kb on + strand, within Shew_0022 at 25.823 kb on + strand, within Shew_0022 at 25.823 kb on + strand, within Shew_0022 at 25.933 kb on - strand, within Shew_0022 at 25.967 kb on + strand, within Shew_0022 at 26.182 kb on - strand, within Shew_0022 at 27.032 kb on - strand at 27.097 kb on + strand at 27.165 kb on + strand, within Shew_0023 at 27.173 kb on - strand, within Shew_0023 at 27.173 kb on - strand, within Shew_0023 at 27.208 kb on + strand, within Shew_0023 at 27.420 kb on - strand, within Shew_0023 at 27.540 kb on + strand at 27.556 kb on - strand at 27.567 kb on + strand at 27.594 kb on - strand at 27.671 kb on + strand, within Shew_0024 at 27.851 kb on - strand, within Shew_0024
Per-strain Table
Position Strand Gene LocusTag Fraction succinate (C) remove 24,811 - +0.0 25,148 + Shew_0021 0.51 -1.9 25,223 - Shew_0021 0.64 +0.7 25,227 + Shew_0021 0.64 -2.1 25,283 - Shew_0021 0.73 +0.7 25,307 + Shew_0021 0.77 +0.6 25,365 + Shew_0021 0.87 +0.4 25,375 + Shew_0021 0.88 +0.0 25,375 + Shew_0021 0.88 -0.4 25,418 - -2.9 25,462 - -1.5 25,795 + Shew_0022 0.13 -1.4 25,823 + Shew_0022 0.15 -1.4 25,823 + Shew_0022 0.15 -1.9 25,933 - Shew_0022 0.23 -1.0 25,967 + Shew_0022 0.25 -2.6 26,182 - Shew_0022 0.40 -1.1 27,032 - -0.6 27,097 + +0.7 27,165 + Shew_0023 0.21 +1.3 27,173 - Shew_0023 0.22 -0.2 27,173 - Shew_0023 0.22 +1.0 27,208 + Shew_0023 0.29 +0.8 27,420 - Shew_0023 0.69 -1.1 27,540 + -0.4 27,556 - +1.3 27,567 + -0.2 27,594 - -0.9 27,671 + Shew_0024 0.22 -2.3 27,851 - Shew_0024 0.80 -2.5
Or see this region's nucleotide sequence