Experiment: Flask growth in 60 uE constant light
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt Synpcc7942_0567 and codA are separated by 2 nucleotides codA and rpoD4 are separated by 30 nucleotides
Synpcc7942_0567: Synpcc7942_0567 - hypothetical protein, at 548,019 to 549,368
_0567
Synpcc7942_0568: codA - cytosine deaminase, at 549,371 to 550,687
codA
Synpcc7942_0569: rpoD4 - DNA-directed RNA polymerase sigma subunit (sigma70/sigma32)-like, at 550,718 to 551,653
rpoD4
Position (kb) 549
550
551 Strain fitness (log2 ratio) -3
-2
-1
0
1 at 548.411 kb on + strand, within Synpcc7942_0567 at 548.422 kb on + strand, within Synpcc7942_0567 at 548.428 kb on - strand, within Synpcc7942_0567 at 548.432 kb on + strand, within Synpcc7942_0567 at 548.440 kb on - strand, within Synpcc7942_0567 at 548.448 kb on - strand, within Synpcc7942_0567 at 548.458 kb on - strand, within Synpcc7942_0567 at 548.460 kb on - strand, within Synpcc7942_0567 at 548.465 kb on - strand, within Synpcc7942_0567 at 548.465 kb on - strand, within Synpcc7942_0567 at 548.484 kb on - strand, within Synpcc7942_0567 at 548.490 kb on + strand, within Synpcc7942_0567 at 548.496 kb on - strand, within Synpcc7942_0567 at 548.503 kb on - strand, within Synpcc7942_0567 at 548.503 kb on - strand, within Synpcc7942_0567 at 548.503 kb on - strand, within Synpcc7942_0567 at 548.503 kb on - strand, within Synpcc7942_0567 at 548.534 kb on + strand, within Synpcc7942_0567 at 548.544 kb on - strand, within Synpcc7942_0567 at 548.552 kb on - strand, within Synpcc7942_0567 at 548.552 kb on - strand, within Synpcc7942_0567 at 548.556 kb on + strand, within Synpcc7942_0567 at 548.564 kb on - strand, within Synpcc7942_0567 at 548.564 kb on - strand, within Synpcc7942_0567 at 548.673 kb on + strand, within Synpcc7942_0567 at 548.681 kb on + strand, within Synpcc7942_0567 at 548.681 kb on - strand, within Synpcc7942_0567 at 548.705 kb on - strand, within Synpcc7942_0567 at 548.711 kb on + strand, within Synpcc7942_0567 at 548.745 kb on + strand, within Synpcc7942_0567 at 548.757 kb on + strand, within Synpcc7942_0567 at 548.765 kb on - strand, within Synpcc7942_0567 at 548.780 kb on - strand, within Synpcc7942_0567 at 548.800 kb on + strand, within Synpcc7942_0567 at 548.800 kb on + strand, within Synpcc7942_0567 at 548.813 kb on - strand, within Synpcc7942_0567 at 548.819 kb on - strand, within Synpcc7942_0567 at 548.823 kb on + strand at 548.828 kb on + strand, within Synpcc7942_0567 at 548.833 kb on + strand, within Synpcc7942_0567 at 548.841 kb on - strand, within Synpcc7942_0567 at 548.842 kb on + strand, within Synpcc7942_0567 at 548.849 kb on + strand, within Synpcc7942_0567 at 548.854 kb on + strand, within Synpcc7942_0567 at 548.862 kb on - strand, within Synpcc7942_0567 at 548.872 kb on + strand, within Synpcc7942_0567 at 548.885 kb on + strand, within Synpcc7942_0567 at 548.890 kb on - strand, within Synpcc7942_0567 at 548.893 kb on - strand, within Synpcc7942_0567 at 548.923 kb on + strand, within Synpcc7942_0567 at 548.937 kb on + strand, within Synpcc7942_0567 at 548.945 kb on + strand, within Synpcc7942_0567 at 548.965 kb on + strand, within Synpcc7942_0567 at 548.965 kb on + strand, within Synpcc7942_0567 at 548.973 kb on - strand, within Synpcc7942_0567 at 548.992 kb on - strand, within Synpcc7942_0567 at 549.098 kb on - strand, within Synpcc7942_0567 at 549.100 kb on + strand, within Synpcc7942_0567 at 549.119 kb on + strand, within Synpcc7942_0567 at 549.134 kb on + strand, within Synpcc7942_0567 at 549.134 kb on + strand, within Synpcc7942_0567 at 549.134 kb on + strand, within Synpcc7942_0567 at 549.137 kb on - strand, within Synpcc7942_0567 at 549.213 kb on + strand, within Synpcc7942_0567 at 549.221 kb on - strand, within Synpcc7942_0567 at 549.276 kb on + strand at 549.276 kb on + strand at 549.282 kb on + strand at 549.282 kb on + strand at 549.282 kb on + strand at 549.283 kb on + strand at 549.290 kb on - strand at 549.290 kb on - strand at 549.291 kb on - strand at 549.305 kb on + strand at 549.338 kb on + strand at 549.345 kb on + strand at 549.345 kb on + strand at 549.345 kb on + strand at 549.345 kb on + strand at 549.345 kb on + strand at 549.346 kb on - strand at 549.353 kb on - strand at 549.353 kb on - strand at 549.353 kb on - strand at 549.389 kb on + strand at 549.412 kb on + strand at 549.464 kb on - strand at 549.550 kb on + strand, within codA at 549.550 kb on + strand, within codA at 549.596 kb on - strand, within codA at 549.597 kb on + strand, within codA at 549.605 kb on - strand, within codA at 549.624 kb on - strand, within codA at 549.653 kb on + strand, within codA at 549.661 kb on - strand, within codA at 549.669 kb on + strand, within codA at 549.677 kb on - strand, within codA at 549.701 kb on - strand, within codA at 549.731 kb on + strand, within codA at 549.742 kb on + strand, within codA at 549.750 kb on - strand, within codA at 549.750 kb on - strand, within codA at 549.750 kb on - strand, within codA at 549.828 kb on + strand, within codA at 549.843 kb on + strand, within codA at 549.843 kb on + strand, within codA at 549.843 kb on + strand, within codA at 549.867 kb on + strand, within codA at 549.867 kb on + strand, within codA at 549.875 kb on - strand, within codA at 549.886 kb on + strand, within codA at 549.886 kb on + strand, within codA at 549.886 kb on + strand, within codA at 549.886 kb on + strand, within codA at 549.894 kb on - strand, within codA at 549.894 kb on - strand, within codA at 549.894 kb on - strand, within codA at 549.900 kb on + strand, within codA at 549.908 kb on - strand, within codA at 549.935 kb on + strand, within codA at 549.945 kb on - strand, within codA at 549.948 kb on + strand, within codA at 549.950 kb on + strand, within codA at 549.973 kb on + strand, within codA at 549.975 kb on - strand, within codA at 550.080 kb on + strand, within codA at 550.088 kb on - strand, within codA at 550.093 kb on - strand, within codA at 550.147 kb on + strand, within codA at 550.155 kb on - strand, within codA at 550.155 kb on - strand, within codA at 550.156 kb on + strand, within codA at 550.165 kb on - strand, within codA at 550.226 kb on + strand, within codA at 550.226 kb on + strand, within codA at 550.234 kb on - strand at 550.234 kb on - strand, within codA at 550.263 kb on - strand, within codA at 550.270 kb on + strand, within codA at 550.278 kb on - strand, within codA at 550.283 kb on - strand, within codA at 550.294 kb on - strand, within codA at 550.298 kb on + strand, within codA at 550.311 kb on - strand, within codA at 550.311 kb on - strand, within codA at 550.312 kb on - strand, within codA at 550.370 kb on + strand, within codA at 550.391 kb on + strand, within codA at 550.399 kb on + strand, within codA at 550.407 kb on - strand, within codA at 550.414 kb on + strand, within codA at 550.426 kb on - strand, within codA at 550.474 kb on - strand, within codA at 550.484 kb on + strand, within codA at 550.506 kb on + strand, within codA at 550.514 kb on - strand, within codA at 550.519 kb on - strand, within codA at 550.599 kb on - strand at 550.604 kb on - strand at 550.610 kb on + strand at 550.621 kb on - strand at 550.623 kb on + strand at 550.655 kb on - strand at 550.673 kb on - strand at 550.692 kb on + strand at 550.692 kb on + strand at 550.699 kb on - strand at 550.699 kb on - strand at 550.699 kb on - strand at 550.719 kb on + strand at 550.719 kb on - strand at 550.726 kb on + strand at 550.726 kb on + strand at 550.726 kb on + strand at 550.739 kb on - strand at 550.741 kb on + strand at 550.741 kb on + strand at 550.921 kb on + strand, within rpoD4 at 550.953 kb on - strand, within rpoD4 at 550.963 kb on + strand, within rpoD4 at 550.963 kb on + strand, within rpoD4 at 550.970 kb on + strand at 550.971 kb on - strand at 550.971 kb on - strand, within rpoD4 at 551.031 kb on - strand, within rpoD4 at 551.042 kb on + strand, within rpoD4 at 551.077 kb on - strand, within rpoD4 at 551.137 kb on - strand, within rpoD4 at 551.293 kb on - strand at 551.364 kb on - strand, within rpoD4 at 551.364 kb on - strand, within rpoD4 at 551.520 kb on - strand, within rpoD4 at 551.538 kb on - strand, within rpoD4 at 551.555 kb on - strand, within rpoD4 at 551.629 kb on + strand at 551.630 kb on - strand at 551.643 kb on + strand at 551.667 kb on + strand at 551.677 kb on + strand at 551.679 kb on + strand at 551.679 kb on + strand
Per-strain Table
Position Strand Gene LocusTag Fraction Flask growth in 60 uE constant light remove 548,411 + Synpcc7942_0567 0.29 -1.0 548,422 + Synpcc7942_0567 0.30 -0.0 548,428 - Synpcc7942_0567 0.30 -0.3 548,432 + Synpcc7942_0567 0.31 -0.3 548,440 - Synpcc7942_0567 0.31 +0.7 548,448 - Synpcc7942_0567 0.32 +0.0 548,458 - Synpcc7942_0567 0.33 -1.4 548,460 - Synpcc7942_0567 0.33 -0.0 548,465 - Synpcc7942_0567 0.33 +0.1 548,465 - Synpcc7942_0567 0.33 +1.0 548,484 - Synpcc7942_0567 0.34 -0.2 548,490 + Synpcc7942_0567 0.35 -0.1 548,496 - Synpcc7942_0567 0.35 -0.6 548,503 - Synpcc7942_0567 0.36 +0.3 548,503 - Synpcc7942_0567 0.36 -0.7 548,503 - Synpcc7942_0567 0.36 -0.0 548,503 - Synpcc7942_0567 0.36 +0.7 548,534 + Synpcc7942_0567 0.38 -0.3 548,544 - Synpcc7942_0567 0.39 -0.1 548,552 - Synpcc7942_0567 0.39 -0.4 548,552 - Synpcc7942_0567 0.39 -0.6 548,556 + Synpcc7942_0567 0.40 -0.4 548,564 - Synpcc7942_0567 0.40 +0.0 548,564 - Synpcc7942_0567 0.40 -0.4 548,673 + Synpcc7942_0567 0.48 -0.4 548,681 + Synpcc7942_0567 0.49 +0.5 548,681 - Synpcc7942_0567 0.49 -0.2 548,705 - Synpcc7942_0567 0.51 -1.3 548,711 + Synpcc7942_0567 0.51 -0.3 548,745 + Synpcc7942_0567 0.54 -0.2 548,757 + Synpcc7942_0567 0.55 -0.1 548,765 - Synpcc7942_0567 0.55 -0.3 548,780 - Synpcc7942_0567 0.56 -0.2 548,800 + Synpcc7942_0567 0.58 -1.5 548,800 + Synpcc7942_0567 0.58 +0.3 548,813 - Synpcc7942_0567 0.59 +0.1 548,819 - Synpcc7942_0567 0.59 -0.1 548,823 + +0.7 548,828 + Synpcc7942_0567 0.60 -0.1 548,833 + Synpcc7942_0567 0.60 +0.3 548,841 - Synpcc7942_0567 0.61 -1.7 548,842 + Synpcc7942_0567 0.61 +0.1 548,849 + Synpcc7942_0567 0.61 -0.3 548,854 + Synpcc7942_0567 0.62 -0.3 548,862 - Synpcc7942_0567 0.62 +0.8 548,872 + Synpcc7942_0567 0.63 -0.0 548,885 + Synpcc7942_0567 0.64 +0.9 548,890 - Synpcc7942_0567 0.65 +1.2 548,893 - Synpcc7942_0567 0.65 -0.7 548,923 + Synpcc7942_0567 0.67 +0.1 548,937 + Synpcc7942_0567 0.68 -0.1 548,945 + Synpcc7942_0567 0.69 -0.6 548,965 + Synpcc7942_0567 0.70 -0.6 548,965 + Synpcc7942_0567 0.70 -1.0 548,973 - Synpcc7942_0567 0.71 -1.5 548,992 - Synpcc7942_0567 0.72 -0.3 549,098 - Synpcc7942_0567 0.80 -0.1 549,100 + Synpcc7942_0567 0.80 -0.2 549,119 + Synpcc7942_0567 0.81 -0.2 549,134 + Synpcc7942_0567 0.83 -0.9 549,134 + Synpcc7942_0567 0.83 -0.6 549,134 + Synpcc7942_0567 0.83 +0.6 549,137 - Synpcc7942_0567 0.83 -0.3 549,213 + Synpcc7942_0567 0.88 +0.2 549,221 - Synpcc7942_0567 0.89 -0.6 549,276 + +1.0 549,276 + -0.5 549,282 + -0.1 549,282 + -2.2 549,282 + -0.4 549,283 + +0.4 549,290 - +0.2 549,290 - +0.4 549,291 - +0.7 549,305 + -0.3 549,338 + -1.2 549,345 + +0.1 549,345 + -0.6 549,345 + -0.3 549,345 + -0.2 549,345 + +0.1 549,346 - -1.8 549,353 - +1.4 549,353 - -0.0 549,353 - -1.8 549,389 + -0.3 549,412 + -0.1 549,464 - -0.2 549,550 + codA Synpcc7942_0568 0.14 -0.7 549,550 + codA Synpcc7942_0568 0.14 -0.4 549,596 - codA Synpcc7942_0568 0.17 -0.2 549,597 + codA Synpcc7942_0568 0.17 +0.0 549,605 - codA Synpcc7942_0568 0.18 +0.7 549,624 - codA Synpcc7942_0568 0.19 -0.3 549,653 + codA Synpcc7942_0568 0.21 -1.4 549,661 - codA Synpcc7942_0568 0.22 -0.1 549,669 + codA Synpcc7942_0568 0.23 +1.2 549,677 - codA Synpcc7942_0568 0.23 -0.8 549,701 - codA Synpcc7942_0568 0.25 +0.4 549,731 + codA Synpcc7942_0568 0.27 -0.5 549,742 + codA Synpcc7942_0568 0.28 +0.1 549,750 - codA Synpcc7942_0568 0.29 -0.8 549,750 - codA Synpcc7942_0568 0.29 -0.1 549,750 - codA Synpcc7942_0568 0.29 -0.3 549,828 + codA Synpcc7942_0568 0.35 -0.8 549,843 + codA Synpcc7942_0568 0.36 +0.0 549,843 + codA Synpcc7942_0568 0.36 -0.2 549,843 + codA Synpcc7942_0568 0.36 +0.4 549,867 + codA Synpcc7942_0568 0.38 -2.9 549,867 + codA Synpcc7942_0568 0.38 +0.0 549,875 - codA Synpcc7942_0568 0.38 +0.5 549,886 + codA Synpcc7942_0568 0.39 +0.4 549,886 + codA Synpcc7942_0568 0.39 +0.1 549,886 + codA Synpcc7942_0568 0.39 +0.4 549,886 + codA Synpcc7942_0568 0.39 -0.3 549,894 - codA Synpcc7942_0568 0.40 -0.2 549,894 - codA Synpcc7942_0568 0.40 +0.3 549,894 - codA Synpcc7942_0568 0.40 -0.4 549,900 + codA Synpcc7942_0568 0.40 -0.2 549,908 - codA Synpcc7942_0568 0.41 -0.0 549,935 + codA Synpcc7942_0568 0.43 +0.3 549,945 - codA Synpcc7942_0568 0.44 +0.7 549,948 + codA Synpcc7942_0568 0.44 +0.0 549,950 + codA Synpcc7942_0568 0.44 +0.6 549,973 + codA Synpcc7942_0568 0.46 +0.3 549,975 - codA Synpcc7942_0568 0.46 -0.8 550,080 + codA Synpcc7942_0568 0.54 -0.2 550,088 - codA Synpcc7942_0568 0.54 -0.5 550,093 - codA Synpcc7942_0568 0.55 +0.0 550,147 + codA Synpcc7942_0568 0.59 +0.2 550,155 - codA Synpcc7942_0568 0.60 +0.3 550,155 - codA Synpcc7942_0568 0.60 -0.3 550,156 + codA Synpcc7942_0568 0.60 -0.8 550,165 - codA Synpcc7942_0568 0.60 -0.3 550,226 + codA Synpcc7942_0568 0.65 -0.6 550,226 + codA Synpcc7942_0568 0.65 +0.1 550,234 - -0.2 550,234 - codA Synpcc7942_0568 0.66 +0.2 550,263 - codA Synpcc7942_0568 0.68 -0.4 550,270 + codA Synpcc7942_0568 0.68 +0.5 550,278 - codA Synpcc7942_0568 0.69 +0.7 550,283 - codA Synpcc7942_0568 0.69 -0.4 550,294 - codA Synpcc7942_0568 0.70 -2.7 550,298 + codA Synpcc7942_0568 0.70 -0.8 550,311 - codA Synpcc7942_0568 0.71 -1.0 550,311 - codA Synpcc7942_0568 0.71 +0.3 550,312 - codA Synpcc7942_0568 0.71 -0.0 550,370 + codA Synpcc7942_0568 0.76 -0.1 550,391 + codA Synpcc7942_0568 0.77 -0.9 550,399 + codA Synpcc7942_0568 0.78 +0.4 550,407 - codA Synpcc7942_0568 0.79 -0.7 550,414 + codA Synpcc7942_0568 0.79 -0.5 550,426 - codA Synpcc7942_0568 0.80 -0.0 550,474 - codA Synpcc7942_0568 0.84 -0.1 550,484 + codA Synpcc7942_0568 0.85 +0.1 550,506 + codA Synpcc7942_0568 0.86 +0.1 550,514 - codA Synpcc7942_0568 0.87 -0.3 550,519 - codA Synpcc7942_0568 0.87 -0.7 550,599 - -0.4 550,604 - -0.1 550,610 + +0.2 550,621 - -0.3 550,623 + -0.4 550,655 - -0.6 550,673 - +0.3 550,692 + -0.3 550,692 + -0.1 550,699 - +0.2 550,699 - -0.2 550,699 - -1.0 550,719 + -0.0 550,719 - +0.6 550,726 + -0.4 550,726 + +0.5 550,726 + -0.6 550,739 - +0.3 550,741 + +0.0 550,741 + +0.5 550,921 + rpoD4 Synpcc7942_0569 0.22 +0.2 550,953 - rpoD4 Synpcc7942_0569 0.25 +0.0 550,963 + rpoD4 Synpcc7942_0569 0.26 +0.1 550,963 + rpoD4 Synpcc7942_0569 0.26 +0.0 550,970 + -1.5 550,971 - +0.0 550,971 - rpoD4 Synpcc7942_0569 0.27 -0.9 551,031 - rpoD4 Synpcc7942_0569 0.33 -0.6 551,042 + rpoD4 Synpcc7942_0569 0.35 -0.1 551,077 - rpoD4 Synpcc7942_0569 0.38 -0.1 551,137 - rpoD4 Synpcc7942_0569 0.45 -0.8 551,293 - +0.0 551,364 - rpoD4 Synpcc7942_0569 0.69 -0.1 551,364 - rpoD4 Synpcc7942_0569 0.69 -0.6 551,520 - rpoD4 Synpcc7942_0569 0.86 -0.5 551,538 - rpoD4 Synpcc7942_0569 0.88 -0.2 551,555 - rpoD4 Synpcc7942_0569 0.89 -0.5 551,629 + -0.1 551,630 - -0.9 551,643 + +0.3 551,667 + +0.2 551,677 + -0.6 551,679 + -0.3 551,679 + -0.2
Or see this region's nucleotide sequence