Strain Fitness in Caulobacter crescentus NA1000 around CCNA_00788

Experiment: PYE pH6 copy B

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntCCNA_00787 and CCNA_00788 are separated by 133 nucleotidesCCNA_00788 and CCNA_00789 are separated by 2 nucleotidesCCNA_00789 and CCNA_00790 are separated by 175 nucleotides CCNA_00787: CCNA_00787 - chemotaxis motA protein, at 850,554 to 851,420 _00787 CCNA_00788: CCNA_00788 - transporter, major facilitator superfamily, at 851,554 to 852,870 _00788 CCNA_00789: CCNA_00789 - hypoxia transcriptional regulator FixK, at 852,873 to 853,523 _00789 CCNA_00790: CCNA_00790 - hypoxia negative feedback regulator FixT, at 853,699 to 854,076 _00790 Position (kb) 851 852 853Strain fitness (log2 ratio) -5 -4 -3 -2 -1 0 1 2 3at 850.554 kb on - strandat 850.582 kb on + strandat 850.726 kb on + strand, within CCNA_00787at 850.760 kb on + strand, within CCNA_00787at 850.761 kb on + strand, within CCNA_00787at 850.763 kb on - strand, within CCNA_00787at 850.768 kb on - strand, within CCNA_00787at 850.768 kb on - strand, within CCNA_00787at 850.768 kb on - strand, within CCNA_00787at 850.768 kb on - strand, within CCNA_00787at 850.769 kb on - strand, within CCNA_00787at 850.776 kb on - strand, within CCNA_00787at 850.780 kb on + strand, within CCNA_00787at 850.826 kb on - strand, within CCNA_00787at 850.855 kb on - strand, within CCNA_00787at 850.887 kb on + strand, within CCNA_00787at 850.887 kb on + strand, within CCNA_00787at 850.924 kb on - strand, within CCNA_00787at 850.931 kb on - strand, within CCNA_00787at 850.931 kb on - strand, within CCNA_00787at 850.936 kb on - strand, within CCNA_00787at 850.953 kb on - strand, within CCNA_00787at 850.981 kb on + strand, within CCNA_00787at 850.991 kb on + strand, within CCNA_00787at 850.999 kb on - strand, within CCNA_00787at 850.999 kb on - strand, within CCNA_00787at 851.022 kb on - strand, within CCNA_00787at 851.027 kb on + strand, within CCNA_00787at 851.033 kb on + strand, within CCNA_00787at 851.035 kb on - strand, within CCNA_00787at 851.045 kb on - strand, within CCNA_00787at 851.077 kb on - strand, within CCNA_00787at 851.080 kb on + strand, within CCNA_00787at 851.137 kb on + strand, within CCNA_00787at 851.137 kb on + strand, within CCNA_00787at 851.145 kb on - strand, within CCNA_00787at 851.183 kb on + strand, within CCNA_00787at 851.183 kb on - strand, within CCNA_00787at 851.193 kb on + strand, within CCNA_00787at 851.196 kb on - strand, within CCNA_00787at 851.196 kb on - strand, within CCNA_00787at 851.201 kb on + strand, within CCNA_00787at 851.201 kb on - strand, within CCNA_00787at 851.201 kb on - strand, within CCNA_00787at 851.207 kb on + strand, within CCNA_00787at 851.208 kb on - strand, within CCNA_00787at 851.243 kb on + strand, within CCNA_00787at 851.248 kb on + strand, within CCNA_00787at 851.251 kb on - strand, within CCNA_00787at 851.256 kb on - strand, within CCNA_00787at 851.309 kb on + strand, within CCNA_00787at 851.337 kb on - strandat 851.350 kb on - strandat 851.373 kb on + strandat 851.373 kb on + strandat 851.381 kb on - strandat 851.399 kb on - strandat 851.419 kb on + strandat 851.525 kb on + strandat 851.537 kb on + strandat 851.545 kb on - strandat 851.575 kb on - strandat 851.632 kb on + strandat 851.657 kb on - strandat 851.708 kb on - strand, within CCNA_00788at 851.730 kb on + strand, within CCNA_00788at 851.730 kb on + strand, within CCNA_00788at 851.743 kb on - strand, within CCNA_00788at 851.751 kb on + strand, within CCNA_00788at 851.765 kb on + strand, within CCNA_00788at 851.765 kb on + strand, within CCNA_00788at 851.773 kb on - strand, within CCNA_00788at 851.780 kb on + strand, within CCNA_00788at 851.801 kb on - strand, within CCNA_00788at 851.823 kb on + strand, within CCNA_00788at 851.831 kb on - strand, within CCNA_00788at 851.842 kb on + strand, within CCNA_00788at 851.842 kb on + strand, within CCNA_00788at 851.857 kb on + strand, within CCNA_00788at 851.865 kb on - strand, within CCNA_00788at 851.870 kb on - strand, within CCNA_00788at 851.875 kb on - strand, within CCNA_00788at 851.888 kb on + strand, within CCNA_00788at 851.888 kb on + strand, within CCNA_00788at 851.891 kb on - strand, within CCNA_00788at 851.896 kb on - strand, within CCNA_00788at 851.898 kb on + strand, within CCNA_00788at 851.919 kb on + strand, within CCNA_00788at 851.919 kb on + strand, within CCNA_00788at 851.919 kb on + strand, within CCNA_00788at 851.927 kb on - strand, within CCNA_00788at 851.927 kb on - strand, within CCNA_00788at 851.953 kb on + strand, within CCNA_00788at 851.953 kb on + strand, within CCNA_00788at 851.953 kb on + strand, within CCNA_00788at 851.981 kb on + strand, within CCNA_00788at 851.989 kb on - strand, within CCNA_00788at 852.023 kb on + strand, within CCNA_00788at 852.023 kb on + strand, within CCNA_00788at 852.023 kb on + strand, within CCNA_00788at 852.023 kb on + strand, within CCNA_00788at 852.023 kb on + strand, within CCNA_00788at 852.023 kb on + strand, within CCNA_00788at 852.031 kb on - strand, within CCNA_00788at 852.031 kb on - strandat 852.050 kb on - strand, within CCNA_00788at 852.080 kb on + strand, within CCNA_00788at 852.080 kb on + strand, within CCNA_00788at 852.080 kb on + strand, within CCNA_00788at 852.088 kb on - strand, within CCNA_00788at 852.088 kb on - strand, within CCNA_00788at 852.093 kb on - strand, within CCNA_00788at 852.095 kb on + strand, within CCNA_00788at 852.098 kb on - strand, within CCNA_00788at 852.103 kb on - strand, within CCNA_00788at 852.103 kb on - strand, within CCNA_00788at 852.206 kb on + strand, within CCNA_00788at 852.258 kb on + strand, within CCNA_00788at 852.258 kb on + strand, within CCNA_00788at 852.258 kb on + strand, within CCNA_00788at 852.258 kb on + strand, within CCNA_00788at 852.258 kb on + strand, within CCNA_00788at 852.266 kb on - strand, within CCNA_00788at 852.307 kb on + strand, within CCNA_00788at 852.307 kb on + strand, within CCNA_00788at 852.307 kb on + strand, within CCNA_00788at 852.314 kb on + strand, within CCNA_00788at 852.315 kb on - strand, within CCNA_00788at 852.315 kb on - strand, within CCNA_00788at 852.315 kb on - strand, within CCNA_00788at 852.315 kb on - strand, within CCNA_00788at 852.326 kb on - strand, within CCNA_00788at 852.327 kb on - strand, within CCNA_00788at 852.352 kb on - strand, within CCNA_00788at 852.360 kb on + strand, within CCNA_00788at 852.377 kb on + strand, within CCNA_00788at 852.387 kb on + strand, within CCNA_00788at 852.395 kb on - strand, within CCNA_00788at 852.425 kb on + strand, within CCNA_00788at 852.430 kb on + strand, within CCNA_00788at 852.447 kb on - strand, within CCNA_00788at 852.481 kb on - strand, within CCNA_00788at 852.498 kb on + strand, within CCNA_00788at 852.498 kb on + strand, within CCNA_00788at 852.498 kb on + strand, within CCNA_00788at 852.498 kb on + strand, within CCNA_00788at 852.498 kb on + strand, within CCNA_00788at 852.506 kb on - strand, within CCNA_00788at 852.516 kb on - strand, within CCNA_00788at 852.563 kb on + strand, within CCNA_00788at 852.568 kb on + strand, within CCNA_00788at 852.574 kb on + strand, within CCNA_00788at 852.582 kb on - strand, within CCNA_00788at 852.612 kb on + strand, within CCNA_00788at 852.628 kb on + strand, within CCNA_00788at 852.629 kb on - strand, within CCNA_00788at 852.631 kb on - strand, within CCNA_00788at 852.675 kb on - strand, within CCNA_00788at 852.677 kb on - strand, within CCNA_00788at 852.684 kb on - strand, within CCNA_00788at 852.709 kb on - strand, within CCNA_00788at 852.719 kb on + strand, within CCNA_00788at 852.765 kb on + strandat 852.765 kb on + strandat 852.773 kb on - strandat 852.800 kb on - strandat 852.802 kb on + strandat 852.838 kb on + strandat 852.838 kb on + strandat 852.838 kb on + strandat 852.846 kb on - strandat 852.856 kb on - strandat 852.863 kb on + strandat 852.870 kb on + strandat 852.911 kb on + strandat 852.914 kb on - strandat 852.939 kb on + strand, within CCNA_00789at 852.946 kb on + strand, within CCNA_00789at 852.947 kb on - strand, within CCNA_00789at 852.995 kb on + strand, within CCNA_00789at 853.077 kb on + strand, within CCNA_00789at 853.084 kb on + strand, within CCNA_00789at 853.095 kb on + strand, within CCNA_00789at 853.095 kb on + strand, within CCNA_00789at 853.103 kb on - strand, within CCNA_00789at 853.103 kb on - strand, within CCNA_00789at 853.114 kb on + strand, within CCNA_00789at 853.186 kb on + strand, within CCNA_00789at 853.261 kb on + strand, within CCNA_00789at 853.269 kb on - strand, within CCNA_00789at 853.357 kb on - strand, within CCNA_00789at 853.414 kb on - strand, within CCNA_00789at 853.461 kb on + strandat 853.497 kb on - strandat 853.528 kb on - strandat 853.590 kb on + strandat 853.590 kb on + strandat 853.590 kb on + strandat 853.595 kb on + strandat 853.598 kb on - strandat 853.598 kb on - strandat 853.627 kb on - strandat 853.632 kb on + strandat 853.634 kb on + strandat 853.642 kb on - strandat 853.717 kb on - strandat 853.764 kb on + strand, within CCNA_00790at 853.772 kb on - strand, within CCNA_00790at 853.809 kb on + strand, within CCNA_00790at 853.811 kb on + strand, within CCNA_00790at 853.811 kb on + strand, within CCNA_00790at 853.811 kb on + strand, within CCNA_00790at 853.819 kb on - strand, within CCNA_00790at 853.819 kb on - strand, within CCNA_00790at 853.844 kb on + strand, within CCNA_00790at 853.854 kb on - strand, within CCNA_00790at 853.864 kb on - strand, within CCNA_00790

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Per-strain Table

Position Strand Gene LocusTag Fraction PYE pH6 copy B
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850,554 - +0.6
850,582 + +0.5
850,726 + CCNA_00787 0.20 -1.1
850,760 + CCNA_00787 0.24 -1.1
850,761 + CCNA_00787 0.24 +0.5
850,763 - CCNA_00787 0.24 +1.2
850,768 - CCNA_00787 0.25 +0.6
850,768 - CCNA_00787 0.25 +1.1
850,768 - CCNA_00787 0.25 +1.1
850,768 - CCNA_00787 0.25 +0.1
850,769 - CCNA_00787 0.25 +2.9
850,776 - CCNA_00787 0.26 +1.5
850,780 + CCNA_00787 0.26 -0.7
850,826 - CCNA_00787 0.31 +0.7
850,855 - CCNA_00787 0.35 -0.1
850,887 + CCNA_00787 0.38 -0.8
850,887 + CCNA_00787 0.38 -0.3
850,924 - CCNA_00787 0.43 +1.1
850,931 - CCNA_00787 0.43 +1.4
850,931 - CCNA_00787 0.43 +0.8
850,936 - CCNA_00787 0.44 +1.5
850,953 - CCNA_00787 0.46 +1.9
850,981 + CCNA_00787 0.49 -2.1
850,991 + CCNA_00787 0.50 +0.9
850,999 - CCNA_00787 0.51 +1.3
850,999 - CCNA_00787 0.51 +1.3
851,022 - CCNA_00787 0.54 +1.5
851,027 + CCNA_00787 0.55 -1.3
851,033 + CCNA_00787 0.55 -1.6
851,035 - CCNA_00787 0.55 +0.9
851,045 - CCNA_00787 0.57 +1.0
851,077 - CCNA_00787 0.60 +2.1
851,080 + CCNA_00787 0.61 +0.2
851,137 + CCNA_00787 0.67 -1.4
851,137 + CCNA_00787 0.67 +1.1
851,145 - CCNA_00787 0.68 +0.3
851,183 + CCNA_00787 0.73 -1.3
851,183 - CCNA_00787 0.73 +0.3
851,193 + CCNA_00787 0.74 +0.1
851,196 - CCNA_00787 0.74 +1.0
851,196 - CCNA_00787 0.74 +0.7
851,201 + CCNA_00787 0.75 -0.8
851,201 - CCNA_00787 0.75 +1.1
851,201 - CCNA_00787 0.75 +0.6
851,207 + CCNA_00787 0.75 +0.1
851,208 - CCNA_00787 0.75 +1.7
851,243 + CCNA_00787 0.79 -0.5
851,248 + CCNA_00787 0.80 -0.1
851,251 - CCNA_00787 0.80 +1.9
851,256 - CCNA_00787 0.81 +1.6
851,309 + CCNA_00787 0.87 -0.3
851,337 - +1.2
851,350 - +0.7
851,373 + -1.5
851,373 + -0.6
851,381 - +1.3
851,399 - -0.4
851,419 + +0.0
851,525 + +0.7
851,537 + +0.1
851,545 - -0.7
851,575 - -2.1
851,632 + -1.7
851,657 - -3.0
851,708 - CCNA_00788 0.12 -0.8
851,730 + CCNA_00788 0.13 +0.8
851,730 + CCNA_00788 0.13 +0.3
851,743 - CCNA_00788 0.14 -2.8
851,751 + CCNA_00788 0.15 -0.5
851,765 + CCNA_00788 0.16 +2.2
851,765 + CCNA_00788 0.16 +2.1
851,773 - CCNA_00788 0.17 -1.5
851,780 + CCNA_00788 0.17 -0.1
851,801 - CCNA_00788 0.19 -0.8
851,823 + CCNA_00788 0.20 -0.1
851,831 - CCNA_00788 0.21 -0.1
851,842 + CCNA_00788 0.22 +0.9
851,842 + CCNA_00788 0.22 -1.0
851,857 + CCNA_00788 0.23 -0.3
851,865 - CCNA_00788 0.24 -2.2
851,870 - CCNA_00788 0.24 -0.5
851,875 - CCNA_00788 0.24 -3.2
851,888 + CCNA_00788 0.25 +0.3
851,888 + CCNA_00788 0.25 +0.7
851,891 - CCNA_00788 0.26 +0.5
851,896 - CCNA_00788 0.26 -2.8
851,898 + CCNA_00788 0.26 +0.0
851,919 + CCNA_00788 0.28 +1.1
851,919 + CCNA_00788 0.28 +1.1
851,919 + CCNA_00788 0.28 +0.8
851,927 - CCNA_00788 0.28 -0.8
851,927 - CCNA_00788 0.28 +1.5
851,953 + CCNA_00788 0.30 +0.9
851,953 + CCNA_00788 0.30 +1.3
851,953 + CCNA_00788 0.30 +1.5
851,981 + CCNA_00788 0.32 -0.1
851,989 - CCNA_00788 0.33 +1.2
852,023 + CCNA_00788 0.36 +0.6
852,023 + CCNA_00788 0.36 +0.6
852,023 + CCNA_00788 0.36 -0.2
852,023 + CCNA_00788 0.36 +1.1
852,023 + CCNA_00788 0.36 +1.8
852,023 + CCNA_00788 0.36 +0.2
852,031 - CCNA_00788 0.36 -0.8
852,031 - +2.5
852,050 - CCNA_00788 0.38 -1.6
852,080 + CCNA_00788 0.40 -1.3
852,080 + CCNA_00788 0.40 +0.3
852,080 + CCNA_00788 0.40 +0.8
852,088 - CCNA_00788 0.41 +0.8
852,088 - CCNA_00788 0.41 +0.8
852,093 - CCNA_00788 0.41 -2.3
852,095 + CCNA_00788 0.41 -0.6
852,098 - CCNA_00788 0.41 -2.4
852,103 - CCNA_00788 0.42 +0.5
852,103 - CCNA_00788 0.42 -2.2
852,206 + CCNA_00788 0.50 +0.5
852,258 + CCNA_00788 0.53 +0.9
852,258 + CCNA_00788 0.53 +0.2
852,258 + CCNA_00788 0.53 +0.6
852,258 + CCNA_00788 0.53 +1.9
852,258 + CCNA_00788 0.53 -0.2
852,266 - CCNA_00788 0.54 -3.0
852,307 + CCNA_00788 0.57 -0.2
852,307 + CCNA_00788 0.57 -0.4
852,307 + CCNA_00788 0.57 +0.8
852,314 + CCNA_00788 0.58 +0.5
852,315 - CCNA_00788 0.58 -0.5
852,315 - CCNA_00788 0.58 -1.9
852,315 - CCNA_00788 0.58 -0.1
852,315 - CCNA_00788 0.58 -1.8
852,326 - CCNA_00788 0.59 -1.5
852,327 - CCNA_00788 0.59 -1.4
852,352 - CCNA_00788 0.61 +0.5
852,360 + CCNA_00788 0.61 +0.8
852,377 + CCNA_00788 0.62 +0.5
852,387 + CCNA_00788 0.63 +0.5
852,395 - CCNA_00788 0.64 -0.1
852,425 + CCNA_00788 0.66 +1.3
852,430 + CCNA_00788 0.67 +2.5
852,447 - CCNA_00788 0.68 +0.5
852,481 - CCNA_00788 0.70 +0.8
852,498 + CCNA_00788 0.72 +1.9
852,498 + CCNA_00788 0.72 -1.2
852,498 + CCNA_00788 0.72 +0.9
852,498 + CCNA_00788 0.72 +1.5
852,498 + CCNA_00788 0.72 +0.1
852,506 - CCNA_00788 0.72 +1.0
852,516 - CCNA_00788 0.73 +1.2
852,563 + CCNA_00788 0.77 +1.2
852,568 + CCNA_00788 0.77 -0.4
852,574 + CCNA_00788 0.77 +1.3
852,582 - CCNA_00788 0.78 -0.7
852,612 + CCNA_00788 0.80 -0.5
852,628 + CCNA_00788 0.82 +1.8
852,629 - CCNA_00788 0.82 -0.9
852,631 - CCNA_00788 0.82 -0.8
852,675 - CCNA_00788 0.85 +1.1
852,677 - CCNA_00788 0.85 +2.3
852,684 - CCNA_00788 0.86 -0.8
852,709 - CCNA_00788 0.88 +0.7
852,719 + CCNA_00788 0.88 +0.7
852,765 + -1.2
852,765 + +0.9
852,773 - +1.1
852,800 - +1.5
852,802 + -0.6
852,838 + +0.3
852,838 + -1.8
852,838 + +0.0
852,846 - -0.0
852,856 - +0.1
852,863 + +0.3
852,870 + -0.3
852,911 + -2.8
852,914 - -4.1
852,939 + CCNA_00789 0.10 -2.8
852,946 + CCNA_00789 0.11 -1.1
852,947 - CCNA_00789 0.11 -2.8
852,995 + CCNA_00789 0.19 -1.6
853,077 + CCNA_00789 0.31 -4.1
853,084 + CCNA_00789 0.32 -3.3
853,095 + CCNA_00789 0.34 -3.9
853,095 + CCNA_00789 0.34 -1.5
853,103 - CCNA_00789 0.35 -3.7
853,103 - CCNA_00789 0.35 -3.2
853,114 + CCNA_00789 0.37 -2.1
853,186 + CCNA_00789 0.48 -3.4
853,261 + CCNA_00789 0.60 -2.2
853,269 - CCNA_00789 0.61 -1.9
853,357 - CCNA_00789 0.74 -3.0
853,414 - CCNA_00789 0.83 -4.9
853,461 + -2.0
853,497 - +0.8
853,528 - -1.3
853,590 + -3.1
853,590 + -1.3
853,590 + -3.7
853,595 + -2.9
853,598 - -2.2
853,598 - -3.9
853,627 - +0.5
853,632 + +0.4
853,634 + -0.5
853,642 - -0.8
853,717 - -1.6
853,764 + CCNA_00790 0.17 +0.6
853,772 - CCNA_00790 0.19 -0.1
853,809 + CCNA_00790 0.29 +0.8
853,811 + CCNA_00790 0.30 +1.1
853,811 + CCNA_00790 0.30 +0.5
853,811 + CCNA_00790 0.30 +1.7
853,819 - CCNA_00790 0.32 +0.2
853,819 - CCNA_00790 0.32 -2.4
853,844 + CCNA_00790 0.38 +1.4
853,854 - CCNA_00790 0.41 -0.8
853,864 - CCNA_00790 0.44 -0.1

Or see this region's nucleotide sequence