Experiment: PYE pH6 copy B
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt CCNA_00639 and CCNA_00640 are separated by 145 nucleotides CCNA_00640 and CCNA_00641 are separated by 203 nucleotides CCNA_00641 and CCNA_00642 overlap by 31 nucleotides
CCNA_00639: CCNA_00639 - heme:hemopexin-binding protein, at 690,126 to 691,751
_00639
CCNA_00640: CCNA_00640 - hypothetical protein, at 691,897 to 692,172
_00640
CCNA_00641: CCNA_00641 - hypothetical protein, at 692,376 to 692,672
_00641
CCNA_00642: CCNA_00642 - hypothetical protein, at 692,642 to 692,899
_00642
Position (kb) 691
692
693 Strain fitness (log2 ratio) -4
-3
-2
-1
0
1
2
3 at 690.902 kb on - strand, within CCNA_00639 at 690.902 kb on - strand, within CCNA_00639 at 690.902 kb on - strand, within CCNA_00639 at 690.902 kb on - strand, within CCNA_00639 at 690.902 kb on - strand, within CCNA_00639 at 690.902 kb on - strand, within CCNA_00639 at 690.904 kb on + strand, within CCNA_00639 at 690.913 kb on - strand, within CCNA_00639 at 690.919 kb on + strand at 690.968 kb on - strand, within CCNA_00639 at 690.973 kb on - strand, within CCNA_00639 at 691.012 kb on + strand, within CCNA_00639 at 691.012 kb on + strand, within CCNA_00639 at 691.034 kb on - strand, within CCNA_00639 at 691.045 kb on - strand, within CCNA_00639 at 691.045 kb on - strand, within CCNA_00639 at 691.071 kb on + strand, within CCNA_00639 at 691.083 kb on + strand, within CCNA_00639 at 691.120 kb on - strand, within CCNA_00639 at 691.120 kb on - strand, within CCNA_00639 at 691.125 kb on + strand, within CCNA_00639 at 691.125 kb on + strand, within CCNA_00639 at 691.133 kb on - strand, within CCNA_00639 at 691.133 kb on - strand, within CCNA_00639 at 691.133 kb on - strand, within CCNA_00639 at 691.150 kb on - strand, within CCNA_00639 at 691.205 kb on + strand, within CCNA_00639 at 691.218 kb on - strand, within CCNA_00639 at 691.238 kb on + strand, within CCNA_00639 at 691.238 kb on + strand, within CCNA_00639 at 691.302 kb on - strand, within CCNA_00639 at 691.302 kb on - strand, within CCNA_00639 at 691.364 kb on - strand, within CCNA_00639 at 691.400 kb on - strand, within CCNA_00639 at 691.413 kb on + strand, within CCNA_00639 at 691.421 kb on - strand, within CCNA_00639 at 691.421 kb on - strand, within CCNA_00639 at 691.439 kb on - strand, within CCNA_00639 at 691.458 kb on + strand, within CCNA_00639 at 691.466 kb on - strand, within CCNA_00639 at 691.466 kb on - strand, within CCNA_00639 at 691.466 kb on - strand, within CCNA_00639 at 691.466 kb on - strand, within CCNA_00639 at 691.494 kb on + strand, within CCNA_00639 at 691.503 kb on + strand, within CCNA_00639 at 691.514 kb on + strand, within CCNA_00639 at 691.542 kb on - strand, within CCNA_00639 at 691.578 kb on - strand, within CCNA_00639 at 691.580 kb on - strand, within CCNA_00639 at 691.584 kb on + strand, within CCNA_00639 at 691.585 kb on + strand, within CCNA_00639 at 691.655 kb on - strand at 691.662 kb on + strand at 691.692 kb on + strand at 691.700 kb on - strand at 691.700 kb on - strand at 691.702 kb on - strand at 691.702 kb on - strand at 691.704 kb on + strand at 691.704 kb on + strand at 691.704 kb on + strand at 691.704 kb on + strand at 691.704 kb on + strand at 691.704 kb on + strand at 691.712 kb on - strand at 691.712 kb on - strand at 691.712 kb on - strand at 691.712 kb on - strand at 691.712 kb on - strand at 691.712 kb on - strand at 691.712 kb on - strand at 691.712 kb on - strand at 691.712 kb on - strand at 691.712 kb on - strand at 691.718 kb on - strand at 691.733 kb on - strand at 691.759 kb on - strand at 691.772 kb on - strand at 691.973 kb on + strand, within CCNA_00640 at 692.005 kb on + strand, within CCNA_00640 at 692.005 kb on + strand, within CCNA_00640 at 692.005 kb on + strand, within CCNA_00640 at 692.005 kb on + strand, within CCNA_00640 at 692.005 kb on + strand, within CCNA_00640 at 692.008 kb on - strand, within CCNA_00640 at 692.013 kb on - strand, within CCNA_00640 at 692.013 kb on - strand, within CCNA_00640 at 692.013 kb on - strand, within CCNA_00640 at 692.013 kb on - strand, within CCNA_00640 at 692.038 kb on + strand, within CCNA_00640 at 692.038 kb on + strand, within CCNA_00640 at 692.038 kb on + strand, within CCNA_00640 at 692.038 kb on + strand, within CCNA_00640 at 692.038 kb on + strand, within CCNA_00640 at 692.038 kb on + strand, within CCNA_00640 at 692.038 kb on + strand, within CCNA_00640 at 692.038 kb on + strand, within CCNA_00640 at 692.038 kb on + strand, within CCNA_00640 at 692.038 kb on + strand, within CCNA_00640 at 692.038 kb on + strand, within CCNA_00640 at 692.038 kb on + strand, within CCNA_00640 at 692.038 kb on + strand, within CCNA_00640 at 692.038 kb on + strand, within CCNA_00640 at 692.046 kb on - strand, within CCNA_00640 at 692.046 kb on - strand, within CCNA_00640 at 692.046 kb on - strand, within CCNA_00640 at 692.046 kb on - strand, within CCNA_00640 at 692.046 kb on - strand, within CCNA_00640 at 692.046 kb on - strand, within CCNA_00640 at 692.046 kb on - strand at 692.046 kb on - strand, within CCNA_00640 at 692.046 kb on - strand, within CCNA_00640 at 692.046 kb on - strand, within CCNA_00640 at 692.046 kb on - strand, within CCNA_00640 at 692.046 kb on - strand, within CCNA_00640 at 692.046 kb on - strand, within CCNA_00640 at 692.046 kb on - strand, within CCNA_00640 at 692.046 kb on - strand, within CCNA_00640 at 692.046 kb on - strand, within CCNA_00640 at 692.046 kb on - strand, within CCNA_00640 at 692.046 kb on - strand, within CCNA_00640 at 692.046 kb on - strand, within CCNA_00640 at 692.046 kb on - strand, within CCNA_00640 at 692.046 kb on - strand, within CCNA_00640 at 692.046 kb on - strand, within CCNA_00640 at 692.046 kb on - strand, within CCNA_00640 at 692.060 kb on - strand, within CCNA_00640 at 692.064 kb on + strand, within CCNA_00640 at 692.067 kb on - strand, within CCNA_00640 at 692.073 kb on - strand, within CCNA_00640 at 692.102 kb on + strand, within CCNA_00640 at 692.102 kb on + strand, within CCNA_00640 at 692.110 kb on - strand, within CCNA_00640 at 692.111 kb on - strand, within CCNA_00640 at 692.113 kb on + strand, within CCNA_00640 at 692.135 kb on + strand, within CCNA_00640 at 692.141 kb on - strand, within CCNA_00640 at 692.143 kb on - strand, within CCNA_00640 at 692.143 kb on - strand, within CCNA_00640 at 692.143 kb on - strand, within CCNA_00640 at 692.143 kb on - strand, within CCNA_00640 at 692.145 kb on + strand at 692.145 kb on + strand at 692.145 kb on + strand at 692.150 kb on + strand at 692.150 kb on + strand at 692.150 kb on + strand at 692.153 kb on - strand at 692.153 kb on - strand at 692.160 kb on - strand at 692.195 kb on + strand at 692.195 kb on + strand at 692.200 kb on + strand at 692.200 kb on + strand at 692.208 kb on - strand at 692.210 kb on + strand at 692.215 kb on + strand at 692.225 kb on - strand at 692.255 kb on + strand at 692.263 kb on - strand at 692.341 kb on + strand at 692.341 kb on + strand at 692.341 kb on + strand at 692.349 kb on - strand at 692.349 kb on - strand at 692.349 kb on - strand at 692.358 kb on - strand at 692.360 kb on + strand at 692.360 kb on + strand at 692.360 kb on + strand at 692.368 kb on - strand at 692.368 kb on - strand at 692.389 kb on - strand at 692.389 kb on - strand at 692.402 kb on + strand at 692.405 kb on - strand at 692.451 kb on + strand, within CCNA_00641 at 692.463 kb on + strand, within CCNA_00641 at 692.484 kb on + strand, within CCNA_00641 at 692.496 kb on + strand, within CCNA_00641 at 692.501 kb on + strand, within CCNA_00641 at 692.503 kb on - strand, within CCNA_00641 at 692.504 kb on - strand, within CCNA_00641 at 692.512 kb on + strand, within CCNA_00641 at 692.515 kb on + strand, within CCNA_00641 at 692.521 kb on - strand, within CCNA_00641 at 692.535 kb on + strand, within CCNA_00641 at 692.547 kb on + strand, within CCNA_00641 at 692.555 kb on - strand, within CCNA_00641 at 692.568 kb on - strand, within CCNA_00641 at 692.593 kb on - strand, within CCNA_00641 at 692.593 kb on - strand, within CCNA_00641 at 692.612 kb on + strand, within CCNA_00641 at 692.625 kb on - strand, within CCNA_00641 at 692.669 kb on - strand at 692.691 kb on - strand, within CCNA_00642 at 692.712 kb on + strand, within CCNA_00642 at 692.712 kb on + strand, within CCNA_00642 at 692.712 kb on + strand, within CCNA_00642 at 692.713 kb on + strand, within CCNA_00642 at 692.721 kb on - strand, within CCNA_00642 at 692.721 kb on - strand, within CCNA_00642 at 692.721 kb on - strand, within CCNA_00642 at 692.721 kb on - strand, within CCNA_00642 at 692.721 kb on - strand, within CCNA_00642 at 692.721 kb on - strand, within CCNA_00642 at 692.721 kb on - strand, within CCNA_00642 at 692.793 kb on + strand, within CCNA_00642 at 692.801 kb on - strand, within CCNA_00642 at 692.822 kb on - strand, within CCNA_00642 at 692.827 kb on - strand, within CCNA_00642 at 692.834 kb on + strand, within CCNA_00642 at 692.867 kb on + strand, within CCNA_00642 at 692.867 kb on + strand, within CCNA_00642 at 692.869 kb on + strand, within CCNA_00642 at 692.875 kb on - strand at 692.929 kb on - strand at 693.001 kb on + strand at 693.001 kb on + strand at 693.001 kb on + strand at 693.001 kb on + strand at 693.001 kb on + strand at 693.001 kb on + strand at 693.009 kb on - strand at 693.009 kb on - strand at 693.009 kb on - strand at 693.009 kb on - strand at 693.020 kb on - strand at 693.027 kb on - strand at 693.066 kb on - strand at 693.066 kb on - strand at 693.076 kb on + strand at 693.086 kb on + strand at 693.094 kb on - strand at 693.107 kb on + strand at 693.132 kb on + strand at 693.135 kb on - strand
Per-strain Table
Position Strand Gene LocusTag Fraction PYE pH6 copy B remove 690,902 - CCNA_00639 0.48 -0.9 690,902 - CCNA_00639 0.48 +0.0 690,902 - CCNA_00639 0.48 -1.4 690,902 - CCNA_00639 0.48 -1.1 690,902 - CCNA_00639 0.48 +1.1 690,902 - CCNA_00639 0.48 +0.7 690,904 + CCNA_00639 0.48 -1.9 690,913 - CCNA_00639 0.48 +0.5 690,919 + +2.6 690,968 - CCNA_00639 0.52 +0.6 690,973 - CCNA_00639 0.52 -0.7 691,012 + CCNA_00639 0.54 -2.1 691,012 + CCNA_00639 0.54 -1.0 691,034 - CCNA_00639 0.56 +0.9 691,045 - CCNA_00639 0.57 -2.3 691,045 - CCNA_00639 0.57 -0.2 691,071 + CCNA_00639 0.58 +0.1 691,083 + CCNA_00639 0.59 +0.0 691,120 - CCNA_00639 0.61 -0.1 691,120 - CCNA_00639 0.61 +0.1 691,125 + CCNA_00639 0.61 -0.2 691,125 + CCNA_00639 0.61 -0.3 691,133 - CCNA_00639 0.62 +0.3 691,133 - CCNA_00639 0.62 -0.2 691,133 - CCNA_00639 0.62 +1.8 691,150 - CCNA_00639 0.63 +0.8 691,205 + CCNA_00639 0.66 +0.9 691,218 - CCNA_00639 0.67 -0.7 691,238 + CCNA_00639 0.68 +0.0 691,238 + CCNA_00639 0.68 -2.0 691,302 - CCNA_00639 0.72 +0.5 691,302 - CCNA_00639 0.72 -0.4 691,364 - CCNA_00639 0.76 +1.9 691,400 - CCNA_00639 0.78 +0.3 691,413 + CCNA_00639 0.79 +0.6 691,421 - CCNA_00639 0.80 +0.8 691,421 - CCNA_00639 0.80 -2.4 691,439 - CCNA_00639 0.81 -1.3 691,458 + CCNA_00639 0.82 -1.0 691,466 - CCNA_00639 0.82 -0.3 691,466 - CCNA_00639 0.82 +0.4 691,466 - CCNA_00639 0.82 -1.6 691,466 - CCNA_00639 0.82 +1.0 691,494 + CCNA_00639 0.84 +2.6 691,503 + CCNA_00639 0.85 -3.2 691,514 + CCNA_00639 0.85 +0.2 691,542 - CCNA_00639 0.87 +1.2 691,578 - CCNA_00639 0.89 -1.2 691,580 - CCNA_00639 0.89 -0.3 691,584 + CCNA_00639 0.90 -1.9 691,585 + CCNA_00639 0.90 -0.4 691,655 - +2.0 691,662 + -0.2 691,692 + -1.9 691,700 - -2.6 691,700 - -1.2 691,702 - -2.2 691,702 - -3.3 691,704 + -0.7 691,704 + +0.1 691,704 + +0.7 691,704 + -1.2 691,704 + +0.2 691,704 + -1.2 691,712 - -2.6 691,712 - -0.7 691,712 - -3.2 691,712 - -2.9 691,712 - -1.6 691,712 - -0.1 691,712 - -2.1 691,712 - -2.1 691,712 - -0.6 691,712 - -0.8 691,718 - -0.6 691,733 - -1.3 691,759 - +0.0 691,772 - +1.3 691,973 + CCNA_00640 0.28 -1.6 692,005 + CCNA_00640 0.39 -0.9 692,005 + CCNA_00640 0.39 -3.4 692,005 + CCNA_00640 0.39 -1.5 692,005 + CCNA_00640 0.39 +3.0 692,005 + CCNA_00640 0.39 -0.7 692,008 - CCNA_00640 0.40 -2.8 692,013 - CCNA_00640 0.42 -2.0 692,013 - CCNA_00640 0.42 -1.0 692,013 - CCNA_00640 0.42 -1.2 692,013 - CCNA_00640 0.42 +0.2 692,038 + CCNA_00640 0.51 +0.2 692,038 + CCNA_00640 0.51 +1.4 692,038 + CCNA_00640 0.51 -1.2 692,038 + CCNA_00640 0.51 -2.3 692,038 + CCNA_00640 0.51 -0.4 692,038 + CCNA_00640 0.51 -1.9 692,038 + CCNA_00640 0.51 -1.0 692,038 + CCNA_00640 0.51 +1.0 692,038 + CCNA_00640 0.51 -2.1 692,038 + CCNA_00640 0.51 -1.8 692,038 + CCNA_00640 0.51 -0.3 692,038 + CCNA_00640 0.51 +3.2 692,038 + CCNA_00640 0.51 -3.2 692,038 + CCNA_00640 0.51 -2.4 692,046 - CCNA_00640 0.54 -0.4 692,046 - CCNA_00640 0.54 -1.9 692,046 - CCNA_00640 0.54 -1.2 692,046 - CCNA_00640 0.54 -2.4 692,046 - CCNA_00640 0.54 -1.3 692,046 - CCNA_00640 0.54 -0.7 692,046 - +1.6 692,046 - CCNA_00640 0.54 -1.9 692,046 - CCNA_00640 0.54 -1.4 692,046 - CCNA_00640 0.54 -2.0 692,046 - CCNA_00640 0.54 -1.2 692,046 - CCNA_00640 0.54 +1.6 692,046 - CCNA_00640 0.54 -2.1 692,046 - CCNA_00640 0.54 -2.0 692,046 - CCNA_00640 0.54 -1.9 692,046 - CCNA_00640 0.54 -1.4 692,046 - CCNA_00640 0.54 -3.1 692,046 - CCNA_00640 0.54 -2.6 692,046 - CCNA_00640 0.54 -4.2 692,046 - CCNA_00640 0.54 -2.1 692,046 - CCNA_00640 0.54 -2.2 692,046 - CCNA_00640 0.54 -2.3 692,046 - CCNA_00640 0.54 -2.2 692,060 - CCNA_00640 0.59 -2.9 692,064 + CCNA_00640 0.61 -0.3 692,067 - CCNA_00640 0.62 -0.3 692,073 - CCNA_00640 0.64 +0.8 692,102 + CCNA_00640 0.74 -1.3 692,102 + CCNA_00640 0.74 -2.9 692,110 - CCNA_00640 0.77 -3.0 692,111 - CCNA_00640 0.78 -1.0 692,113 + CCNA_00640 0.78 -1.1 692,135 + CCNA_00640 0.86 -3.4 692,141 - CCNA_00640 0.88 -1.2 692,143 - CCNA_00640 0.89 +1.7 692,143 - CCNA_00640 0.89 +1.3 692,143 - CCNA_00640 0.89 +1.4 692,143 - CCNA_00640 0.89 +0.5 692,145 + -0.1 692,145 + -0.7 692,145 + -1.2 692,150 + +0.1 692,150 + -0.8 692,150 + +0.0 692,153 - +0.5 692,153 - -1.4 692,160 - -2.0 692,195 + +0.7 692,195 + +0.6 692,200 + -2.7 692,200 + +0.2 692,208 - +1.6 692,210 + +0.0 692,215 + +1.3 692,225 - -1.9 692,255 + +0.3 692,263 - -1.8 692,341 + -1.6 692,341 + -2.0 692,341 + -0.6 692,349 - -1.6 692,349 - -1.5 692,349 - -2.5 692,358 - +0.0 692,360 + -2.3 692,360 + +2.9 692,360 + -1.9 692,368 - +0.5 692,368 - +1.1 692,389 - -1.1 692,389 - -1.0 692,402 + -2.5 692,405 - +1.2 692,451 + CCNA_00641 0.25 +1.6 692,463 + CCNA_00641 0.29 -2.1 692,484 + CCNA_00641 0.36 -1.0 692,496 + CCNA_00641 0.40 -1.6 692,501 + CCNA_00641 0.42 -2.7 692,503 - CCNA_00641 0.43 +0.5 692,504 - CCNA_00641 0.43 +1.6 692,512 + CCNA_00641 0.46 -1.2 692,515 + CCNA_00641 0.47 -1.3 692,521 - CCNA_00641 0.49 -0.6 692,535 + CCNA_00641 0.54 -0.4 692,547 + CCNA_00641 0.58 -1.0 692,555 - CCNA_00641 0.60 -2.1 692,568 - CCNA_00641 0.65 -1.1 692,593 - CCNA_00641 0.73 -1.0 692,593 - CCNA_00641 0.73 -1.9 692,612 + CCNA_00641 0.79 -2.4 692,625 - CCNA_00641 0.84 -0.7 692,669 - -3.0 692,691 - CCNA_00642 0.19 -1.0 692,712 + CCNA_00642 0.27 +0.0 692,712 + CCNA_00642 0.27 -1.9 692,712 + CCNA_00642 0.27 -2.3 692,713 + CCNA_00642 0.28 -1.2 692,721 - CCNA_00642 0.31 -3.1 692,721 - CCNA_00642 0.31 -1.1 692,721 - CCNA_00642 0.31 -0.7 692,721 - CCNA_00642 0.31 -0.1 692,721 - CCNA_00642 0.31 +1.3 692,721 - CCNA_00642 0.31 +1.1 692,721 - CCNA_00642 0.31 -1.1 692,793 + CCNA_00642 0.59 -1.7 692,801 - CCNA_00642 0.62 -0.9 692,822 - CCNA_00642 0.70 -1.5 692,827 - CCNA_00642 0.72 +0.2 692,834 + CCNA_00642 0.74 -0.8 692,867 + CCNA_00642 0.87 -1.1 692,867 + CCNA_00642 0.87 -1.0 692,869 + CCNA_00642 0.88 -0.7 692,875 - +0.2 692,929 - -1.4 693,001 + -0.7 693,001 + +0.6 693,001 + +0.6 693,001 + -2.1 693,001 + -1.4 693,001 + -1.0 693,009 - -2.2 693,009 - -0.2 693,009 - +0.3 693,009 - -1.6 693,020 - -0.4 693,027 - -2.1 693,066 - -2.3 693,066 - -0.4 693,076 + +0.8 693,086 + +1.1 693,094 - -2.6 693,107 + +1.2 693,132 + -0.3 693,135 - +0.6
Or see this region's nucleotide sequence