Experiment: PYE pH6 copy B
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt CCNA_00248 and CCNA_00249 are separated by 56 nucleotides CCNA_00249 and CCNA_00250 are separated by 80 nucleotides CCNA_00250 and CCNA_00251 are separated by 48 nucleotides CCNA_00251 and CCNA_00252 are separated by 111 nucleotides
CCNA_00248: CCNA_00248 - sensor histidine protein kinase, at 259,514 to 260,914
_00248
CCNA_00249: CCNA_00249 - SCO1/SenC family protein, at 260,971 to 261,561
_00249
CCNA_00250: CCNA_00250 - poly(3-hydroxyalkanoate) depolymerase, at 261,642 to 262,904
_00250
CCNA_00251: CCNA_00251 - zinc metalloprotease, at 262,953 to 263,672
_00251
CCNA_00252: CCNA_00252 - multimodular transpeptidase-transglycosylase PbpX, at 263,784 to 265,745
_00252
Position (kb) 261
262
263 Strain fitness (log2 ratio) -4
-3
-2
-1
0
1
2 at 260.654 kb on + strand, within CCNA_00248 at 260.654 kb on + strand, within CCNA_00248 at 260.671 kb on + strand, within CCNA_00248 at 260.679 kb on - strand, within CCNA_00248 at 260.679 kb on - strand, within CCNA_00248 at 260.679 kb on - strand, within CCNA_00248 at 260.679 kb on - strand, within CCNA_00248 at 260.685 kb on + strand, within CCNA_00248 at 260.686 kb on - strand, within CCNA_00248 at 260.693 kb on - strand, within CCNA_00248 at 260.718 kb on + strand, within CCNA_00248 at 260.723 kb on + strand, within CCNA_00248 at 260.723 kb on + strand, within CCNA_00248 at 260.731 kb on - strand, within CCNA_00248 at 260.731 kb on - strand, within CCNA_00248 at 260.731 kb on - strand, within CCNA_00248 at 260.743 kb on - strand, within CCNA_00248 at 260.759 kb on + strand at 260.803 kb on + strand at 260.804 kb on + strand at 260.806 kb on - strand at 260.811 kb on - strand at 260.812 kb on - strand at 260.814 kb on + strand at 260.814 kb on + strand at 260.814 kb on + strand at 260.819 kb on + strand at 260.822 kb on - strand at 260.822 kb on - strand at 260.861 kb on - strand at 260.866 kb on - strand at 260.927 kb on + strand at 260.927 kb on + strand at 260.935 kb on - strand at 260.935 kb on - strand at 260.984 kb on + strand at 260.989 kb on + strand at 260.992 kb on - strand at 261.015 kb on - strand at 261.026 kb on + strand at 261.033 kb on - strand, within CCNA_00249 at 261.038 kb on + strand, within CCNA_00249 at 261.067 kb on - strand, within CCNA_00249 at 261.142 kb on + strand, within CCNA_00249 at 261.142 kb on + strand, within CCNA_00249 at 261.174 kb on - strand, within CCNA_00249 at 261.185 kb on + strand, within CCNA_00249 at 261.187 kb on - strand, within CCNA_00249 at 261.191 kb on + strand, within CCNA_00249 at 261.191 kb on + strand, within CCNA_00249 at 261.191 kb on + strand, within CCNA_00249 at 261.191 kb on + strand, within CCNA_00249 at 261.199 kb on - strand, within CCNA_00249 at 261.199 kb on - strand, within CCNA_00249 at 261.202 kb on + strand, within CCNA_00249 at 261.202 kb on + strand, within CCNA_00249 at 261.202 kb on + strand, within CCNA_00249 at 261.202 kb on + strand, within CCNA_00249 at 261.243 kb on + strand, within CCNA_00249 at 261.251 kb on - strand, within CCNA_00249 at 261.252 kb on + strand, within CCNA_00249 at 261.283 kb on + strand, within CCNA_00249 at 261.291 kb on - strand, within CCNA_00249 at 261.301 kb on - strand, within CCNA_00249 at 261.303 kb on + strand, within CCNA_00249 at 261.311 kb on - strand, within CCNA_00249 at 261.317 kb on - strand, within CCNA_00249 at 261.317 kb on - strand, within CCNA_00249 at 261.352 kb on - strand, within CCNA_00249 at 261.354 kb on + strand, within CCNA_00249 at 261.362 kb on + strand, within CCNA_00249 at 261.372 kb on + strand, within CCNA_00249 at 261.390 kb on + strand, within CCNA_00249 at 261.390 kb on + strand, within CCNA_00249 at 261.393 kb on + strand, within CCNA_00249 at 261.398 kb on - strand, within CCNA_00249 at 261.414 kb on + strand, within CCNA_00249 at 261.415 kb on + strand, within CCNA_00249 at 261.424 kb on + strand, within CCNA_00249 at 261.429 kb on + strand, within CCNA_00249 at 261.429 kb on + strand, within CCNA_00249 at 261.429 kb on + strand, within CCNA_00249 at 261.437 kb on + strand, within CCNA_00249 at 261.437 kb on + strand, within CCNA_00249 at 261.441 kb on + strand, within CCNA_00249 at 261.442 kb on - strand, within CCNA_00249 at 261.499 kb on + strand, within CCNA_00249 at 261.500 kb on + strand, within CCNA_00249 at 261.500 kb on + strand, within CCNA_00249 at 261.508 kb on - strand at 261.508 kb on - strand at 261.508 kb on - strand at 261.508 kb on - strand at 261.534 kb on + strand at 261.542 kb on - strand at 261.564 kb on - strand at 261.591 kb on - strand at 261.608 kb on + strand at 261.637 kb on + strand at 261.644 kb on + strand at 261.644 kb on + strand at 261.644 kb on + strand at 261.644 kb on + strand at 261.644 kb on + strand at 261.652 kb on - strand at 261.652 kb on - strand at 261.652 kb on - strand at 261.664 kb on - strand at 261.676 kb on + strand at 261.684 kb on + strand at 261.684 kb on + strand at 261.692 kb on - strand at 261.692 kb on - strand at 261.716 kb on + strand at 261.811 kb on + strand, within CCNA_00250 at 261.814 kb on - strand, within CCNA_00250 at 261.839 kb on + strand, within CCNA_00250 at 261.839 kb on + strand, within CCNA_00250 at 261.839 kb on + strand, within CCNA_00250 at 261.839 kb on + strand, within CCNA_00250 at 261.839 kb on + strand, within CCNA_00250 at 261.839 kb on + strand, within CCNA_00250 at 261.839 kb on + strand, within CCNA_00250 at 261.839 kb on + strand, within CCNA_00250 at 261.839 kb on + strand, within CCNA_00250 at 261.847 kb on - strand, within CCNA_00250 at 261.847 kb on - strand, within CCNA_00250 at 261.847 kb on - strand, within CCNA_00250 at 261.847 kb on - strand, within CCNA_00250 at 261.847 kb on - strand, within CCNA_00250 at 261.871 kb on + strand, within CCNA_00250 at 261.892 kb on + strand, within CCNA_00250 at 261.892 kb on + strand, within CCNA_00250 at 261.892 kb on + strand, within CCNA_00250 at 261.962 kb on + strand, within CCNA_00250 at 261.982 kb on - strand, within CCNA_00250 at 261.999 kb on - strand, within CCNA_00250 at 262.024 kb on - strand, within CCNA_00250 at 262.025 kb on + strand, within CCNA_00250 at 262.026 kb on + strand, within CCNA_00250 at 262.026 kb on + strand, within CCNA_00250 at 262.026 kb on + strand, within CCNA_00250 at 262.034 kb on - strand, within CCNA_00250 at 262.034 kb on - strand, within CCNA_00250 at 262.045 kb on + strand, within CCNA_00250 at 262.118 kb on + strand, within CCNA_00250 at 262.123 kb on + strand, within CCNA_00250 at 262.159 kb on + strand, within CCNA_00250 at 262.164 kb on + strand, within CCNA_00250 at 262.172 kb on + strand, within CCNA_00250 at 262.271 kb on - strand, within CCNA_00250 at 262.317 kb on - strand, within CCNA_00250 at 262.412 kb on - strand, within CCNA_00250 at 262.447 kb on - strand, within CCNA_00250 at 262.465 kb on - strand, within CCNA_00250 at 262.529 kb on + strand, within CCNA_00250 at 262.537 kb on - strand, within CCNA_00250 at 262.571 kb on + strand, within CCNA_00250 at 262.624 kb on - strand, within CCNA_00250 at 262.654 kb on + strand, within CCNA_00250 at 262.654 kb on + strand, within CCNA_00250 at 262.657 kb on - strand, within CCNA_00250 at 262.667 kb on + strand, within CCNA_00250 at 262.680 kb on - strand, within CCNA_00250 at 262.685 kb on - strand, within CCNA_00250 at 262.695 kb on + strand, within CCNA_00250 at 262.722 kb on + strand, within CCNA_00250 at 262.722 kb on + strand, within CCNA_00250 at 262.722 kb on + strand, within CCNA_00250 at 262.722 kb on + strand, within CCNA_00250 at 262.727 kb on + strand, within CCNA_00250 at 262.727 kb on + strand, within CCNA_00250 at 262.730 kb on - strand, within CCNA_00250 at 262.735 kb on - strand, within CCNA_00250 at 262.735 kb on - strand, within CCNA_00250 at 262.735 kb on - strand, within CCNA_00250 at 262.769 kb on + strand, within CCNA_00250 at 262.778 kb on + strand at 262.791 kb on - strand at 262.814 kb on + strand at 262.849 kb on - strand at 262.906 kb on - strand at 262.923 kb on - strand at 262.950 kb on - strand at 262.950 kb on - strand at 262.968 kb on + strand at 262.968 kb on + strand at 263.016 kb on + strand at 263.021 kb on + strand at 263.029 kb on - strand, within CCNA_00251 at 263.069 kb on + strand, within CCNA_00251 at 263.074 kb on + strand, within CCNA_00251 at 263.095 kb on + strand, within CCNA_00251 at 263.101 kb on + strand, within CCNA_00251 at 263.101 kb on - strand, within CCNA_00251 at 263.146 kb on - strand, within CCNA_00251 at 263.204 kb on - strand, within CCNA_00251 at 263.216 kb on - strand, within CCNA_00251 at 263.294 kb on - strand, within CCNA_00251 at 263.316 kb on - strand, within CCNA_00251 at 263.333 kb on + strand, within CCNA_00251 at 263.340 kb on + strand, within CCNA_00251 at 263.340 kb on + strand, within CCNA_00251 at 263.348 kb on - strand, within CCNA_00251 at 263.373 kb on - strand, within CCNA_00251 at 263.382 kb on + strand, within CCNA_00251 at 263.382 kb on + strand, within CCNA_00251 at 263.382 kb on + strand, within CCNA_00251 at 263.383 kb on + strand, within CCNA_00251 at 263.390 kb on - strand, within CCNA_00251 at 263.446 kb on + strand, within CCNA_00251 at 263.455 kb on - strand, within CCNA_00251 at 263.530 kb on + strand, within CCNA_00251 at 263.547 kb on + strand, within CCNA_00251 at 263.552 kb on + strand, within CCNA_00251 at 263.555 kb on - strand, within CCNA_00251 at 263.576 kb on + strand, within CCNA_00251 at 263.578 kb on + strand, within CCNA_00251 at 263.665 kb on + strand at 263.698 kb on + strand at 263.711 kb on - strand at 263.718 kb on - strand at 263.720 kb on + strand at 263.728 kb on - strand at 263.728 kb on - strand at 263.732 kb on + strand at 263.736 kb on + strand at 263.739 kb on - strand at 263.759 kb on + strand at 263.768 kb on - strand at 263.785 kb on - strand at 263.790 kb on - strand at 263.806 kb on - strand at 263.834 kb on - strand at 263.889 kb on - strand at 263.904 kb on - strand
Per-strain Table
Position Strand Gene LocusTag Fraction PYE pH6 copy B remove 260,654 + CCNA_00248 0.81 +1.1 260,654 + CCNA_00248 0.81 -1.5 260,671 + CCNA_00248 0.83 -0.2 260,679 - CCNA_00248 0.83 -0.5 260,679 - CCNA_00248 0.83 -0.2 260,679 - CCNA_00248 0.83 +1.4 260,679 - CCNA_00248 0.83 +1.4 260,685 + CCNA_00248 0.84 -2.3 260,686 - CCNA_00248 0.84 +0.6 260,693 - CCNA_00248 0.84 -0.8 260,718 + CCNA_00248 0.86 +0.7 260,723 + CCNA_00248 0.86 -2.0 260,723 + CCNA_00248 0.86 -1.8 260,731 - CCNA_00248 0.87 +0.5 260,731 - CCNA_00248 0.87 +1.8 260,731 - CCNA_00248 0.87 +1.0 260,743 - CCNA_00248 0.88 +0.8 260,759 + -0.9 260,803 + -1.3 260,804 + -0.8 260,806 - +0.1 260,811 - +0.1 260,812 - -0.0 260,814 + -0.2 260,814 + -1.8 260,814 + -2.4 260,819 + -2.3 260,822 - -0.8 260,822 - -2.0 260,861 - -0.1 260,866 - -1.2 260,927 + +0.8 260,927 + +0.8 260,935 - -1.3 260,935 - +0.4 260,984 + +0.1 260,989 + +0.4 260,992 - -3.2 261,015 - -0.9 261,026 + +0.0 261,033 - CCNA_00249 0.10 -1.8 261,038 + CCNA_00249 0.11 -1.6 261,067 - CCNA_00249 0.16 +0.4 261,142 + CCNA_00249 0.29 -0.6 261,142 + CCNA_00249 0.29 +0.1 261,174 - CCNA_00249 0.34 -0.6 261,185 + CCNA_00249 0.36 -0.3 261,187 - CCNA_00249 0.37 +1.3 261,191 + CCNA_00249 0.37 +2.4 261,191 + CCNA_00249 0.37 +0.1 261,191 + CCNA_00249 0.37 +1.1 261,191 + CCNA_00249 0.37 -0.3 261,199 - CCNA_00249 0.39 -2.6 261,199 - CCNA_00249 0.39 -2.2 261,202 + CCNA_00249 0.39 -0.3 261,202 + CCNA_00249 0.39 -0.6 261,202 + CCNA_00249 0.39 +0.4 261,202 + CCNA_00249 0.39 +1.6 261,243 + CCNA_00249 0.46 -1.6 261,251 - CCNA_00249 0.47 -0.2 261,252 + CCNA_00249 0.48 +0.4 261,283 + CCNA_00249 0.53 -0.3 261,291 - CCNA_00249 0.54 -0.5 261,301 - CCNA_00249 0.56 +0.8 261,303 + CCNA_00249 0.56 +0.2 261,311 - CCNA_00249 0.58 -1.7 261,317 - CCNA_00249 0.59 -0.2 261,317 - CCNA_00249 0.59 -0.9 261,352 - CCNA_00249 0.64 +0.8 261,354 + CCNA_00249 0.65 +0.1 261,362 + CCNA_00249 0.66 +0.6 261,372 + CCNA_00249 0.68 -0.3 261,390 + CCNA_00249 0.71 -0.2 261,390 + CCNA_00249 0.71 +0.3 261,393 + CCNA_00249 0.71 -2.0 261,398 - CCNA_00249 0.72 +0.1 261,414 + CCNA_00249 0.75 -0.6 261,415 + CCNA_00249 0.75 +0.8 261,424 + CCNA_00249 0.77 -0.8 261,429 + CCNA_00249 0.77 +1.4 261,429 + CCNA_00249 0.77 -2.8 261,429 + CCNA_00249 0.77 +2.6 261,437 + CCNA_00249 0.79 -1.5 261,437 + CCNA_00249 0.79 +0.5 261,441 + CCNA_00249 0.80 -0.8 261,442 - CCNA_00249 0.80 +0.1 261,499 + CCNA_00249 0.89 +1.1 261,500 + CCNA_00249 0.90 -0.3 261,500 + CCNA_00249 0.90 -0.5 261,508 - -1.2 261,508 - +1.0 261,508 - -1.3 261,508 - -0.3 261,534 + -0.6 261,542 - -2.2 261,564 - +1.1 261,591 - +0.4 261,608 + +1.3 261,637 + +1.0 261,644 + +0.2 261,644 + +0.5 261,644 + -1.4 261,644 + +0.6 261,644 + +0.4 261,652 - +1.8 261,652 - -3.8 261,652 - -0.9 261,664 - -1.8 261,676 + -0.4 261,684 + +1.0 261,684 + +0.6 261,692 - -3.3 261,692 - -2.5 261,716 + -0.2 261,811 + CCNA_00250 0.13 -0.1 261,814 - CCNA_00250 0.14 -1.9 261,839 + CCNA_00250 0.16 +2.5 261,839 + CCNA_00250 0.16 +0.8 261,839 + CCNA_00250 0.16 +0.3 261,839 + CCNA_00250 0.16 +1.0 261,839 + CCNA_00250 0.16 +0.4 261,839 + CCNA_00250 0.16 +0.6 261,839 + CCNA_00250 0.16 -0.9 261,839 + CCNA_00250 0.16 +0.9 261,839 + CCNA_00250 0.16 +0.6 261,847 - CCNA_00250 0.16 +0.8 261,847 - CCNA_00250 0.16 -0.2 261,847 - CCNA_00250 0.16 +0.1 261,847 - CCNA_00250 0.16 +0.6 261,847 - CCNA_00250 0.16 -2.5 261,871 + CCNA_00250 0.18 +0.4 261,892 + CCNA_00250 0.20 +0.5 261,892 + CCNA_00250 0.20 -0.9 261,892 + CCNA_00250 0.20 +2.4 261,962 + CCNA_00250 0.25 +0.5 261,982 - CCNA_00250 0.27 -1.8 261,999 - CCNA_00250 0.28 -1.9 262,024 - CCNA_00250 0.30 -1.6 262,025 + CCNA_00250 0.30 +0.2 262,026 + CCNA_00250 0.30 -0.8 262,026 + CCNA_00250 0.30 +0.6 262,026 + CCNA_00250 0.30 -0.9 262,034 - CCNA_00250 0.31 -0.9 262,034 - CCNA_00250 0.31 -2.2 262,045 + CCNA_00250 0.32 +1.8 262,118 + CCNA_00250 0.38 +2.4 262,123 + CCNA_00250 0.38 +1.1 262,159 + CCNA_00250 0.41 -0.0 262,164 + CCNA_00250 0.41 -0.9 262,172 + CCNA_00250 0.42 +0.2 262,271 - CCNA_00250 0.50 -0.2 262,317 - CCNA_00250 0.53 -1.9 262,412 - CCNA_00250 0.61 +0.8 262,447 - CCNA_00250 0.64 +0.7 262,465 - CCNA_00250 0.65 -0.6 262,529 + CCNA_00250 0.70 +0.8 262,537 - CCNA_00250 0.71 -0.4 262,571 + CCNA_00250 0.74 +1.4 262,624 - CCNA_00250 0.78 -1.3 262,654 + CCNA_00250 0.80 -0.2 262,654 + CCNA_00250 0.80 +0.2 262,657 - CCNA_00250 0.80 -2.2 262,667 + CCNA_00250 0.81 +1.8 262,680 - CCNA_00250 0.82 +1.4 262,685 - CCNA_00250 0.83 -0.6 262,695 + CCNA_00250 0.83 +0.6 262,722 + CCNA_00250 0.86 +2.2 262,722 + CCNA_00250 0.86 +1.1 262,722 + CCNA_00250 0.86 +0.9 262,722 + CCNA_00250 0.86 +0.3 262,727 + CCNA_00250 0.86 +1.3 262,727 + CCNA_00250 0.86 +1.2 262,730 - CCNA_00250 0.86 -1.2 262,735 - CCNA_00250 0.87 -1.1 262,735 - CCNA_00250 0.87 +1.1 262,735 - CCNA_00250 0.87 -0.4 262,769 + CCNA_00250 0.89 +0.8 262,778 + -0.4 262,791 - -1.6 262,814 + +0.4 262,849 - -0.8 262,906 - -0.3 262,923 - -0.3 262,950 - +0.1 262,950 - -1.4 262,968 + -0.3 262,968 + +2.6 263,016 + +0.2 263,021 + +1.8 263,029 - CCNA_00251 0.11 -0.3 263,069 + CCNA_00251 0.16 +1.1 263,074 + CCNA_00251 0.17 +0.6 263,095 + CCNA_00251 0.20 +0.8 263,101 + CCNA_00251 0.21 -0.1 263,101 - CCNA_00251 0.21 +1.2 263,146 - CCNA_00251 0.27 +0.4 263,204 - CCNA_00251 0.35 -0.5 263,216 - CCNA_00251 0.37 -0.2 263,294 - CCNA_00251 0.47 -1.2 263,316 - CCNA_00251 0.50 -0.0 263,333 + CCNA_00251 0.53 +0.9 263,340 + CCNA_00251 0.54 +0.4 263,340 + CCNA_00251 0.54 +1.0 263,348 - CCNA_00251 0.55 -0.9 263,373 - CCNA_00251 0.58 +0.3 263,382 + CCNA_00251 0.60 +0.7 263,382 + CCNA_00251 0.60 +0.3 263,382 + CCNA_00251 0.60 +0.7 263,383 + CCNA_00251 0.60 -0.6 263,390 - CCNA_00251 0.61 +1.0 263,446 + CCNA_00251 0.68 +1.1 263,455 - CCNA_00251 0.70 +0.3 263,530 + CCNA_00251 0.80 +0.1 263,547 + CCNA_00251 0.82 +0.7 263,552 + CCNA_00251 0.83 +0.9 263,555 - CCNA_00251 0.84 -0.0 263,576 + CCNA_00251 0.87 +0.6 263,578 + CCNA_00251 0.87 +0.8 263,665 + +1.4 263,698 + +0.3 263,711 - -0.4 263,718 - +1.3 263,720 + -0.9 263,728 - +2.0 263,728 - +0.9 263,732 + -0.4 263,736 + +0.2 263,739 - +1.1 263,759 + +0.9 263,768 - +1.1 263,785 - +0.6 263,790 - +2.1 263,806 - +1.0 263,834 - +0.4 263,889 - +1.4 263,904 - +0.4
Or see this region's nucleotide sequence