Strain Fitness in Acidovorax sp. GW101-3H11 around Ac3H11_3029

Experiment: L-Glutamine (C)

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntAc3H11_3026 and Ac3H11_3027 are separated by 160 nucleotidesAc3H11_3027 and Ac3H11_3028 are separated by 54 nucleotidesAc3H11_3028 and Ac3H11_3029 are separated by 82 nucleotidesAc3H11_3029 and Ac3H11_3030 are separated by 42 nucleotides Ac3H11_3026 - Excinuclease ABC subunit A, dimeric form, at 48,309 to 54,182 _3026 Ac3H11_3027 - FIG00347480: hypothetical protein, at 54,343 to 54,849 _3027 Ac3H11_3028 - hypothetical protein, at 54,904 to 55,047 _3028 Ac3H11_3029 - Ferredoxin, at 55,130 to 55,447 _3029 Ac3H11_3030 - Amidinotransferase family protein, at 55,490 to 56,500 _3030 Position (kb) 55 56Strain fitness (log2 ratio) -3 -2 -1 0 1 2 3at 54.233 kb on + strandat 54.233 kb on + strandat 54.281 kb on + strandat 54.281 kb on + strandat 54.282 kb on - strandat 54.282 kb on - strandat 54.282 kb on - strandat 54.282 kb on - strandat 54.348 kb on + strandat 54.348 kb on + strandat 54.348 kb on + strandat 54.348 kb on + strandat 54.348 kb on + strandat 54.348 kb on + strandat 54.349 kb on - strandat 54.349 kb on - strandat 54.349 kb on - strandat 54.349 kb on - strandat 54.349 kb on - strandat 54.349 kb on - strandat 54.349 kb on - strandat 54.372 kb on + strandat 54.372 kb on + strandat 55.295 kb on + strand, within Ac3H11_3029at 55.295 kb on + strand, within Ac3H11_3029at 55.446 kb on - strandat 55.471 kb on - strandat 55.474 kb on + strandat 55.474 kb on + strandat 55.475 kb on - strandat 55.878 kb on + strand, within Ac3H11_3030at 55.879 kb on - strand, within Ac3H11_3030at 55.879 kb on - strand, within Ac3H11_3030at 55.926 kb on + strand, within Ac3H11_3030at 55.927 kb on - strand, within Ac3H11_3030at 55.989 kb on + strand, within Ac3H11_3030at 55.989 kb on + strand, within Ac3H11_3030at 55.989 kb on + strand, within Ac3H11_3030at 55.989 kb on + strand, within Ac3H11_3030at 55.989 kb on + strand, within Ac3H11_3030at 55.990 kb on - strand, within Ac3H11_3030at 55.990 kb on - strand, within Ac3H11_3030at 56.068 kb on - strand, within Ac3H11_3030at 56.091 kb on + strand, within Ac3H11_3030at 56.092 kb on - strand, within Ac3H11_3030at 56.151 kb on + strand, within Ac3H11_3030at 56.151 kb on + strand, within Ac3H11_3030at 56.151 kb on + strand, within Ac3H11_3030at 56.151 kb on + strand, within Ac3H11_3030at 56.152 kb on - strand, within Ac3H11_3030at 56.152 kb on - strand, within Ac3H11_3030at 56.152 kb on - strand, within Ac3H11_3030at 56.152 kb on - strand, within Ac3H11_3030at 56.152 kb on - strand, within Ac3H11_3030at 56.152 kb on - strand, within Ac3H11_3030at 56.152 kb on - strand, within Ac3H11_3030at 56.160 kb on + strand, within Ac3H11_3030at 56.161 kb on - strand, within Ac3H11_3030

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Per-strain Table

Position Strand Gene LocusTag Fraction L-Glutamine (C)
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54,233 + -0.7
54,233 + -0.2
54,281 + +0.0
54,281 + +0.1
54,282 - +0.0
54,282 - -0.1
54,282 - -0.2
54,282 - -0.2
54,348 + -0.3
54,348 + -0.3
54,348 + -2.8
54,348 + +0.1
54,348 + -0.5
54,348 + +0.7
54,349 - -0.4
54,349 - +0.4
54,349 - -0.4
54,349 - +0.9
54,349 - +0.4
54,349 - -0.8
54,349 - -1.1
54,372 + +0.7
54,372 + -0.0
55,295 + Ac3H11_3029 0.52 -0.1
55,295 + Ac3H11_3029 0.52 +0.5
55,446 - +0.1
55,471 - +0.7
55,474 + +1.0
55,474 + +0.9
55,475 - -0.3
55,878 + Ac3H11_3030 0.38 +0.5
55,879 - Ac3H11_3030 0.38 -0.0
55,879 - Ac3H11_3030 0.38 -0.7
55,926 + Ac3H11_3030 0.43 -1.0
55,927 - Ac3H11_3030 0.43 +0.2
55,989 + Ac3H11_3030 0.49 +0.0
55,989 + Ac3H11_3030 0.49 +0.3
55,989 + Ac3H11_3030 0.49 +0.3
55,989 + Ac3H11_3030 0.49 -1.0
55,989 + Ac3H11_3030 0.49 -0.1
55,990 - Ac3H11_3030 0.49 +0.2
55,990 - Ac3H11_3030 0.49 +3.2
56,068 - Ac3H11_3030 0.57 -0.1
56,091 + Ac3H11_3030 0.59 -0.2
56,092 - Ac3H11_3030 0.60 +0.9
56,151 + Ac3H11_3030 0.65 +0.4
56,151 + Ac3H11_3030 0.65 -0.5
56,151 + Ac3H11_3030 0.65 -0.7
56,151 + Ac3H11_3030 0.65 +0.2
56,152 - Ac3H11_3030 0.65 +0.2
56,152 - Ac3H11_3030 0.65 -1.2
56,152 - Ac3H11_3030 0.65 +0.4
56,152 - Ac3H11_3030 0.65 +0.2
56,152 - Ac3H11_3030 0.65 -0.0
56,152 - Ac3H11_3030 0.65 +0.5
56,152 - Ac3H11_3030 0.65 -0.4
56,160 + Ac3H11_3030 0.66 -1.1
56,161 - Ac3H11_3030 0.66 -0.1

Or see this region's nucleotide sequence