Strain Fitness in Azospirillum brasilense Sp245 around AZOBR_RS12150

Experiment: L-Aspartic Acid (N)

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntAZOBR_RS12140 and AZOBR_RS12145 are separated by 75 nucleotidesAZOBR_RS12145 and AZOBR_RS12150 overlap by 4 nucleotidesAZOBR_RS12150 and AZOBR_RS12155 are separated by 390 nucleotides AZOBR_RS12140: AZOBR_RS12140 - hypothetical protein, at 2,551,126 to 2,551,797 _RS12140 AZOBR_RS12145: AZOBR_RS12145 - murein hydrolase transporter LrgA, at 2,551,873 to 2,552,247 _RS12145 AZOBR_RS12150: AZOBR_RS12150 - membrane protein, at 2,552,244 to 2,552,966 _RS12150 AZOBR_RS12155: AZOBR_RS12155 - 2-isopropylmalate synthase, at 2,553,357 to 2,555,063 _RS12155 Position (kb) 2552 2553Strain fitness (log2 ratio) -5 -4 -3 -2 -1 0 1at 2551.420 kb on + strand, within AZOBR_RS12140at 2551.802 kb on + strandat 2551.802 kb on + strandat 2551.803 kb on - strandat 2551.833 kb on + strandat 2552.274 kb on + strandat 2552.275 kb on - strandat 2552.322 kb on + strand, within AZOBR_RS12150at 2552.322 kb on + strand, within AZOBR_RS12150at 2552.323 kb on - strand, within AZOBR_RS12150at 2552.443 kb on - strand, within AZOBR_RS12150at 2552.443 kb on - strand, within AZOBR_RS12150at 2553.080 kb on + strandat 2553.080 kb on + strandat 2553.167 kb on - strandat 2553.240 kb on + strandat 2553.240 kb on + strandat 2553.240 kb on + strandat 2553.241 kb on - strandat 2553.417 kb on + strandat 2553.417 kb on + strandat 2553.417 kb on + strandat 2553.417 kb on + strandat 2553.418 kb on - strandat 2553.775 kb on - strand, within AZOBR_RS12155

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Per-strain Table

Position Strand Gene LocusTag Fraction L-Aspartic Acid (N)
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2,551,420 + AZOBR_RS12140 0.44 -1.0
2,551,802 + +0.1
2,551,802 + -0.1
2,551,803 - -0.3
2,551,833 + -0.5
2,552,274 + +0.7
2,552,275 - -0.5
2,552,322 + AZOBR_RS12150 0.11 +0.3
2,552,322 + AZOBR_RS12150 0.11 -0.1
2,552,323 - AZOBR_RS12150 0.11 +1.1
2,552,443 - AZOBR_RS12150 0.28 -0.0
2,552,443 - AZOBR_RS12150 0.28 +0.2
2,553,080 + +1.1
2,553,080 + -0.1
2,553,167 - -5.3
2,553,240 + -0.1
2,553,240 + -0.3
2,553,240 + -0.2
2,553,241 - -3.4
2,553,417 + -4.1
2,553,417 + -3.8
2,553,417 + -4.7
2,553,417 + -2.4
2,553,418 - -4.2
2,553,775 - AZOBR_RS12155 0.24 -2.7

Or see this region's nucleotide sequence