Strain Fitness in Dyella japonica UNC79MFTsu3.2 around ABZR86_RS20880

Experiment: NAG (C)

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntABZR86_RS20870 and ABZR86_RS20875 are separated by 38 nucleotidesABZR86_RS20875 and ABZR86_RS20880 overlap by 2 nucleotidesABZR86_RS20880 and ABZR86_RS20885 are separated by 100 nucleotidesABZR86_RS20885 and ABZR86_RS20890 are separated by 52 nucleotides ABZR86_RS20870: ABZR86_RS20870 - alcohol dehydrogenase catalytic domain-containing protein, at 145,193 to 146,230 _RS20870 ABZR86_RS20875: ABZR86_RS20875 - YciI family protein, at 146,269 to 146,835 _RS20875 ABZR86_RS20880: ABZR86_RS20880 - ester cyclase, at 146,834 to 147,382 _RS20880 ABZR86_RS20885: ABZR86_RS20885 - hypothetical protein, at 147,483 to 147,968 _RS20885 ABZR86_RS20890: ABZR86_RS20890 - RcnB family protein, at 148,021 to 148,407 _RS20890 Position (kb) 146 147 148Strain fitness (log2 ratio) -2 -1 0 1 2at 145.835 kb on + strand, within ABZR86_RS20870at 145.835 kb on + strand, within ABZR86_RS20870at 145.835 kb on + strand, within ABZR86_RS20870at 145.835 kb on + strand, within ABZR86_RS20870at 145.836 kb on - strand, within ABZR86_RS20870at 146.156 kb on + strandat 146.272 kb on + strandat 147.296 kb on + strand, within ABZR86_RS20880at 147.296 kb on + strand, within ABZR86_RS20880at 147.296 kb on + strand, within ABZR86_RS20880at 147.296 kb on + strand, within ABZR86_RS20880at 147.296 kb on + strand, within ABZR86_RS20880at 147.347 kb on + strandat 147.347 kb on + strandat 147.347 kb on + strandat 147.348 kb on - strandat 147.348 kb on - strandat 147.439 kb on + strandat 147.498 kb on + strandat 147.499 kb on - strandat 147.499 kb on - strandat 147.591 kb on + strand, within ABZR86_RS20885at 147.591 kb on + strand, within ABZR86_RS20885at 147.592 kb on - strand, within ABZR86_RS20885at 147.592 kb on - strand, within ABZR86_RS20885at 147.651 kb on + strand, within ABZR86_RS20885at 147.652 kb on - strand, within ABZR86_RS20885at 147.652 kb on - strand, within ABZR86_RS20885at 147.707 kb on + strand, within ABZR86_RS20885at 147.708 kb on - strand, within ABZR86_RS20885at 147.708 kb on - strand, within ABZR86_RS20885at 147.711 kb on + strand, within ABZR86_RS20885at 147.712 kb on - strand, within ABZR86_RS20885at 147.712 kb on - strand, within ABZR86_RS20885at 147.712 kb on - strand, within ABZR86_RS20885at 147.712 kb on - strand, within ABZR86_RS20885at 147.808 kb on - strand, within ABZR86_RS20885at 147.873 kb on + strand, within ABZR86_RS20885at 147.874 kb on - strand, within ABZR86_RS20885at 147.921 kb on + strandat 147.967 kb on - strandat 147.967 kb on - strandat 147.978 kb on - strandat 148.074 kb on - strand, within ABZR86_RS20890at 148.106 kb on + strand, within ABZR86_RS20890at 148.133 kb on + strand, within ABZR86_RS20890at 148.134 kb on - strand, within ABZR86_RS20890at 148.134 kb on - strand, within ABZR86_RS20890at 148.143 kb on - strand, within ABZR86_RS20890at 148.143 kb on - strand, within ABZR86_RS20890at 148.154 kb on + strand, within ABZR86_RS20890at 148.154 kb on + strand, within ABZR86_RS20890at 148.154 kb on + strand, within ABZR86_RS20890at 148.154 kb on + strand, within ABZR86_RS20890at 148.155 kb on - strand, within ABZR86_RS20890at 148.155 kb on - strand, within ABZR86_RS20890at 148.158 kb on - strand, within ABZR86_RS20890at 148.170 kb on - strand, within ABZR86_RS20890at 148.170 kb on - strand, within ABZR86_RS20890at 148.170 kb on - strand, within ABZR86_RS20890at 148.202 kb on + strand, within ABZR86_RS20890at 148.203 kb on - strand, within ABZR86_RS20890at 148.203 kb on - strand, within ABZR86_RS20890

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Per-strain Table

Position Strand Gene LocusTag Fraction NAG (C)
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145,835 + ABZR86_RS20870 0.62 +0.0
145,835 + ABZR86_RS20870 0.62 -0.3
145,835 + ABZR86_RS20870 0.62 +0.1
145,835 + ABZR86_RS20870 0.62 +0.3
145,836 - ABZR86_RS20870 0.62 +1.4
146,156 + -0.6
146,272 + +2.4
147,296 + ABZR86_RS20880 0.84 +0.3
147,296 + ABZR86_RS20880 0.84 +0.3
147,296 + ABZR86_RS20880 0.84 -0.1
147,296 + ABZR86_RS20880 0.84 +0.3
147,296 + ABZR86_RS20880 0.84 -0.1
147,347 + -0.3
147,347 + +0.6
147,347 + -0.6
147,348 - -0.9
147,348 - -1.4
147,439 + -1.6
147,498 + -0.5
147,499 - +0.4
147,499 - -0.5
147,591 + ABZR86_RS20885 0.22 -0.6
147,591 + ABZR86_RS20885 0.22 -1.4
147,592 - ABZR86_RS20885 0.22 -2.5
147,592 - ABZR86_RS20885 0.22 +0.4
147,651 + ABZR86_RS20885 0.35 -0.8
147,652 - ABZR86_RS20885 0.35 +0.5
147,652 - ABZR86_RS20885 0.35 +0.5
147,707 + ABZR86_RS20885 0.46 +0.1
147,708 - ABZR86_RS20885 0.46 -0.3
147,708 - ABZR86_RS20885 0.46 +1.3
147,711 + ABZR86_RS20885 0.47 +0.1
147,712 - ABZR86_RS20885 0.47 +1.0
147,712 - ABZR86_RS20885 0.47 -0.3
147,712 - ABZR86_RS20885 0.47 +0.2
147,712 - ABZR86_RS20885 0.47 -0.9
147,808 - ABZR86_RS20885 0.67 +0.1
147,873 + ABZR86_RS20885 0.80 -0.2
147,874 - ABZR86_RS20885 0.80 -1.8
147,921 + +0.2
147,967 - +0.7
147,967 - +0.2
147,978 - +0.8
148,074 - ABZR86_RS20890 0.14 +0.3
148,106 + ABZR86_RS20890 0.22 +0.1
148,133 + ABZR86_RS20890 0.29 -0.1
148,134 - ABZR86_RS20890 0.29 +0.2
148,134 - ABZR86_RS20890 0.29 +0.5
148,143 - ABZR86_RS20890 0.32 -0.2
148,143 - ABZR86_RS20890 0.32 +0.2
148,154 + ABZR86_RS20890 0.34 +0.7
148,154 + ABZR86_RS20890 0.34 +1.0
148,154 + ABZR86_RS20890 0.34 -0.7
148,154 + ABZR86_RS20890 0.34 +0.2
148,155 - ABZR86_RS20890 0.35 -0.7
148,155 - ABZR86_RS20890 0.35 -0.3
148,158 - ABZR86_RS20890 0.35 +0.0
148,170 - ABZR86_RS20890 0.39 -0.2
148,170 - ABZR86_RS20890 0.39 -0.7
148,170 - ABZR86_RS20890 0.39 -1.3
148,202 + ABZR86_RS20890 0.47 +0.6
148,203 - ABZR86_RS20890 0.47 +0.6
148,203 - ABZR86_RS20890 0.47 -0.3

Or see this region's nucleotide sequence