Experiment: NAG (C)
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt ABZR86_RS19260 and ABZR86_RS19265 are separated by 133 nucleotides ABZR86_RS19265 and ABZR86_RS19270 are separated by 10 nucleotides ABZR86_RS19270 and ABZR86_RS19275 are separated by 134 nucleotides
ABZR86_RS19260: ABZR86_RS19260 - filamentous hemagglutinin N-terminal domain-containing protein, at 309,073 to 311,274
_RS19260
ABZR86_RS19265: ABZR86_RS19265 - YbdD/YjiX family protein, at 311,408 to 311,602
_RS19265
ABZR86_RS19270: ABZR86_RS19270 - carbon starvation CstA family protein, at 311,613 to 313,688
_RS19270
ABZR86_RS19275: ABZR86_RS19275 - hybrid sensor histidine kinase/response regulator, at 313,823 to 317,335
_RS19275
Position (kb) 311
312
313
314 Strain fitness (log2 ratio) -2
-1
0
1
2 at 310.624 kb on + strand, within ABZR86_RS19260 at 310.625 kb on - strand, within ABZR86_RS19260 at 310.625 kb on - strand, within ABZR86_RS19260 at 310.636 kb on + strand, within ABZR86_RS19260 at 310.637 kb on - strand, within ABZR86_RS19260 at 310.637 kb on - strand, within ABZR86_RS19260 at 310.648 kb on + strand, within ABZR86_RS19260 at 310.648 kb on + strand, within ABZR86_RS19260 at 310.648 kb on + strand, within ABZR86_RS19260 at 310.648 kb on + strand, within ABZR86_RS19260 at 310.648 kb on + strand, within ABZR86_RS19260 at 310.649 kb on - strand, within ABZR86_RS19260 at 310.649 kb on - strand, within ABZR86_RS19260 at 310.649 kb on - strand, within ABZR86_RS19260 at 310.649 kb on - strand, within ABZR86_RS19260 at 310.649 kb on - strand, within ABZR86_RS19260 at 310.649 kb on - strand, within ABZR86_RS19260 at 310.649 kb on - strand, within ABZR86_RS19260 at 310.649 kb on - strand, within ABZR86_RS19260 at 310.649 kb on - strand, within ABZR86_RS19260 at 310.735 kb on + strand, within ABZR86_RS19260 at 311.083 kb on - strand at 311.182 kb on + strand at 311.182 kb on + strand at 311.183 kb on - strand at 311.183 kb on - strand at 311.183 kb on - strand at 311.183 kb on - strand at 311.217 kb on + strand at 311.240 kb on - strand at 311.272 kb on + strand at 311.273 kb on - strand at 311.273 kb on - strand at 311.273 kb on - strand at 311.273 kb on - strand at 311.273 kb on - strand at 311.273 kb on - strand at 311.436 kb on + strand, within ABZR86_RS19265 at 311.436 kb on + strand, within ABZR86_RS19265 at 311.437 kb on - strand, within ABZR86_RS19265 at 311.437 kb on - strand, within ABZR86_RS19265 at 311.472 kb on + strand, within ABZR86_RS19265 at 311.472 kb on + strand, within ABZR86_RS19265 at 311.473 kb on - strand, within ABZR86_RS19265 at 311.520 kb on + strand, within ABZR86_RS19265 at 311.520 kb on + strand, within ABZR86_RS19265 at 311.520 kb on + strand, within ABZR86_RS19265 at 311.520 kb on + strand, within ABZR86_RS19265 at 311.520 kb on + strand, within ABZR86_RS19265 at 311.520 kb on + strand, within ABZR86_RS19265 at 311.530 kb on - strand, within ABZR86_RS19265 at 311.530 kb on - strand, within ABZR86_RS19265 at 311.530 kb on - strand, within ABZR86_RS19265 at 311.530 kb on - strand, within ABZR86_RS19265 at 311.644 kb on + strand at 311.644 kb on + strand at 311.644 kb on + strand at 311.645 kb on - strand at 311.645 kb on - strand at 311.645 kb on - strand at 311.764 kb on + strand at 311.764 kb on + strand at 311.764 kb on + strand at 311.765 kb on - strand at 311.765 kb on - strand at 311.765 kb on - strand at 311.890 kb on + strand, within ABZR86_RS19270 at 311.890 kb on + strand, within ABZR86_RS19270 at 311.890 kb on + strand, within ABZR86_RS19270 at 311.890 kb on + strand, within ABZR86_RS19270 at 311.890 kb on + strand, within ABZR86_RS19270 at 311.890 kb on + strand, within ABZR86_RS19270 at 311.891 kb on - strand, within ABZR86_RS19270 at 311.953 kb on + strand, within ABZR86_RS19270 at 312.050 kb on + strand, within ABZR86_RS19270 at 312.050 kb on + strand, within ABZR86_RS19270 at 312.050 kb on + strand, within ABZR86_RS19270 at 312.051 kb on - strand, within ABZR86_RS19270 at 312.051 kb on - strand, within ABZR86_RS19270 at 312.051 kb on - strand, within ABZR86_RS19270 at 312.051 kb on - strand, within ABZR86_RS19270 at 312.085 kb on + strand, within ABZR86_RS19270 at 312.086 kb on - strand, within ABZR86_RS19270 at 312.265 kb on + strand, within ABZR86_RS19270 at 312.265 kb on + strand, within ABZR86_RS19270 at 312.503 kb on - strand, within ABZR86_RS19270 at 312.829 kb on + strand, within ABZR86_RS19270 at 312.830 kb on - strand, within ABZR86_RS19270 at 313.035 kb on - strand, within ABZR86_RS19270 at 313.036 kb on + strand, within ABZR86_RS19270 at 313.036 kb on + strand, within ABZR86_RS19270 at 313.037 kb on - strand, within ABZR86_RS19270 at 313.045 kb on + strand, within ABZR86_RS19270 at 313.045 kb on + strand, within ABZR86_RS19270 at 313.046 kb on - strand, within ABZR86_RS19270 at 313.046 kb on - strand, within ABZR86_RS19270 at 313.088 kb on + strand, within ABZR86_RS19270 at 313.089 kb on - strand, within ABZR86_RS19270 at 313.090 kb on + strand, within ABZR86_RS19270 at 313.090 kb on + strand, within ABZR86_RS19270 at 313.090 kb on + strand, within ABZR86_RS19270 at 313.090 kb on + strand, within ABZR86_RS19270 at 313.091 kb on - strand, within ABZR86_RS19270 at 313.091 kb on - strand, within ABZR86_RS19270 at 313.091 kb on - strand, within ABZR86_RS19270 at 313.091 kb on - strand, within ABZR86_RS19270 at 313.333 kb on + strand, within ABZR86_RS19270 at 313.432 kb on + strand, within ABZR86_RS19270 at 313.433 kb on - strand, within ABZR86_RS19270 at 313.433 kb on - strand, within ABZR86_RS19270 at 313.433 kb on - strand, within ABZR86_RS19270 at 313.433 kb on - strand, within ABZR86_RS19270 at 313.491 kb on + strand at 313.492 kb on - strand at 313.495 kb on + strand at 313.495 kb on + strand at 313.495 kb on + strand at 313.495 kb on + strand at 313.495 kb on + strand at 313.495 kb on + strand at 313.495 kb on + strand at 313.496 kb on - strand at 313.496 kb on - strand at 313.496 kb on - strand at 313.496 kb on - strand at 313.496 kb on - strand at 313.496 kb on - strand at 313.496 kb on - strand at 313.496 kb on - strand at 313.516 kb on + strand at 313.516 kb on + strand at 313.517 kb on - strand at 313.682 kb on + strand at 313.682 kb on + strand at 313.769 kb on + strand at 314.406 kb on + strand, within ABZR86_RS19275 at 314.406 kb on + strand, within ABZR86_RS19275 at 314.407 kb on - strand, within ABZR86_RS19275
Per-strain Table
Position Strand Gene LocusTag Fraction NAG (C) remove 310,624 + ABZR86_RS19260 0.70 +0.8 310,625 - ABZR86_RS19260 0.70 -0.0 310,625 - ABZR86_RS19260 0.70 +0.4 310,636 + ABZR86_RS19260 0.71 -0.2 310,637 - ABZR86_RS19260 0.71 -0.8 310,637 - ABZR86_RS19260 0.71 -0.4 310,648 + ABZR86_RS19260 0.72 +0.5 310,648 + ABZR86_RS19260 0.72 -0.4 310,648 + ABZR86_RS19260 0.72 -0.4 310,648 + ABZR86_RS19260 0.72 +0.6 310,648 + ABZR86_RS19260 0.72 +0.2 310,649 - ABZR86_RS19260 0.72 +0.6 310,649 - ABZR86_RS19260 0.72 -0.2 310,649 - ABZR86_RS19260 0.72 +1.0 310,649 - ABZR86_RS19260 0.72 +0.2 310,649 - ABZR86_RS19260 0.72 -0.0 310,649 - ABZR86_RS19260 0.72 -0.4 310,649 - ABZR86_RS19260 0.72 -0.2 310,649 - ABZR86_RS19260 0.72 +0.7 310,649 - ABZR86_RS19260 0.72 +0.4 310,735 + ABZR86_RS19260 0.75 +0.6 311,083 - +0.9 311,182 + +0.1 311,182 + -0.3 311,183 - -0.3 311,183 - -0.6 311,183 - -0.4 311,183 - -0.3 311,217 + -0.8 311,240 - +1.1 311,272 + -0.8 311,273 - -1.0 311,273 - +0.3 311,273 - -0.4 311,273 - +0.4 311,273 - -0.6 311,273 - +0.6 311,436 + ABZR86_RS19265 0.14 -0.5 311,436 + ABZR86_RS19265 0.14 -0.2 311,437 - ABZR86_RS19265 0.15 +1.8 311,437 - ABZR86_RS19265 0.15 -0.5 311,472 + ABZR86_RS19265 0.33 -0.9 311,472 + ABZR86_RS19265 0.33 -0.2 311,473 - ABZR86_RS19265 0.33 +0.2 311,520 + ABZR86_RS19265 0.57 -1.0 311,520 + ABZR86_RS19265 0.57 -0.3 311,520 + ABZR86_RS19265 0.57 +0.7 311,520 + ABZR86_RS19265 0.57 -0.2 311,520 + ABZR86_RS19265 0.57 +0.0 311,520 + ABZR86_RS19265 0.57 +0.4 311,530 - ABZR86_RS19265 0.63 -1.2 311,530 - ABZR86_RS19265 0.63 -1.1 311,530 - ABZR86_RS19265 0.63 -1.6 311,530 - ABZR86_RS19265 0.63 +0.2 311,644 + -0.4 311,644 + -0.4 311,644 + -0.9 311,645 - -0.4 311,645 - -0.1 311,645 - -0.0 311,764 + +0.6 311,764 + -0.7 311,764 + +0.2 311,765 - -0.2 311,765 - +0.1 311,765 - -0.1 311,890 + ABZR86_RS19270 0.13 +0.2 311,890 + ABZR86_RS19270 0.13 -0.2 311,890 + ABZR86_RS19270 0.13 +0.2 311,890 + ABZR86_RS19270 0.13 +0.1 311,890 + ABZR86_RS19270 0.13 -0.7 311,890 + ABZR86_RS19270 0.13 -0.5 311,891 - ABZR86_RS19270 0.13 +0.8 311,953 + ABZR86_RS19270 0.16 +1.0 312,050 + ABZR86_RS19270 0.21 +0.2 312,050 + ABZR86_RS19270 0.21 +0.7 312,050 + ABZR86_RS19270 0.21 -0.1 312,051 - ABZR86_RS19270 0.21 -0.3 312,051 - ABZR86_RS19270 0.21 +0.2 312,051 - ABZR86_RS19270 0.21 -0.7 312,051 - ABZR86_RS19270 0.21 +0.6 312,085 + ABZR86_RS19270 0.23 -0.2 312,086 - ABZR86_RS19270 0.23 +0.3 312,265 + ABZR86_RS19270 0.31 -0.8 312,265 + ABZR86_RS19270 0.31 -0.2 312,503 - ABZR86_RS19270 0.43 -1.3 312,829 + ABZR86_RS19270 0.59 +0.4 312,830 - ABZR86_RS19270 0.59 +0.2 313,035 - ABZR86_RS19270 0.68 -0.1 313,036 + ABZR86_RS19270 0.69 +1.2 313,036 + ABZR86_RS19270 0.69 -1.6 313,037 - ABZR86_RS19270 0.69 -0.3 313,045 + ABZR86_RS19270 0.69 -0.0 313,045 + ABZR86_RS19270 0.69 -0.2 313,046 - ABZR86_RS19270 0.69 +0.0 313,046 - ABZR86_RS19270 0.69 -0.2 313,088 + ABZR86_RS19270 0.71 +0.0 313,089 - ABZR86_RS19270 0.71 +0.1 313,090 + ABZR86_RS19270 0.71 -0.4 313,090 + ABZR86_RS19270 0.71 -0.2 313,090 + ABZR86_RS19270 0.71 -0.0 313,090 + ABZR86_RS19270 0.71 +1.3 313,091 - ABZR86_RS19270 0.71 -0.7 313,091 - ABZR86_RS19270 0.71 +0.8 313,091 - ABZR86_RS19270 0.71 +0.5 313,091 - ABZR86_RS19270 0.71 -0.1 313,333 + ABZR86_RS19270 0.83 -0.7 313,432 + ABZR86_RS19270 0.88 +0.4 313,433 - ABZR86_RS19270 0.88 +0.1 313,433 - ABZR86_RS19270 0.88 +0.1 313,433 - ABZR86_RS19270 0.88 +0.3 313,433 - ABZR86_RS19270 0.88 -1.1 313,491 + -0.3 313,492 - +0.9 313,495 + -0.6 313,495 + +0.2 313,495 + -0.2 313,495 + -0.1 313,495 + -0.8 313,495 + +0.0 313,495 + -0.5 313,496 - +0.1 313,496 - +0.1 313,496 - +0.7 313,496 - +0.4 313,496 - -1.3 313,496 - -0.7 313,496 - -0.0 313,496 - -0.8 313,516 + -2.0 313,516 + -0.3 313,517 - +0.3 313,682 + +0.6 313,682 + -0.3 313,769 + -0.8 314,406 + ABZR86_RS19275 0.17 +0.0 314,406 + ABZR86_RS19275 0.17 +0.4 314,407 - ABZR86_RS19275 0.17 -0.1
Or see this region's nucleotide sequence