Strain Fitness in Dyella japonica UNC79MFTsu3.2 around ABZR86_RS16210

Experiment: NAG (C)

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntABZR86_RS16205 and ABZR86_RS16210 are separated by 99 nucleotidesABZR86_RS16210 and ABZR86_RS16215 are separated by 209 nucleotides ABZR86_RS16205: ABZR86_RS16205 - LysR family transcriptional regulator, at 3,659,770 to 3,660,669 _RS16205 ABZR86_RS16210: ABZR86_RS16210 - acyl-CoA thioesterase, at 3,660,769 to 3,661,155 _RS16210 ABZR86_RS16215: ABZR86_RS16215 - S9 family peptidase, at 3,661,365 to 3,663,689 _RS16215 Position (kb) 3660 3661 3662Strain fitness (log2 ratio) -2 -1 0 1 2at 3659.962 kb on + strand, within ABZR86_RS16205at 3659.962 kb on + strand, within ABZR86_RS16205at 3659.962 kb on + strand, within ABZR86_RS16205at 3659.962 kb on + strand, within ABZR86_RS16205at 3659.962 kb on + strand, within ABZR86_RS16205at 3659.963 kb on - strand, within ABZR86_RS16205at 3659.963 kb on - strand, within ABZR86_RS16205at 3659.963 kb on - strand, within ABZR86_RS16205at 3659.963 kb on - strand, within ABZR86_RS16205at 3659.965 kb on + strand, within ABZR86_RS16205at 3659.966 kb on - strand, within ABZR86_RS16205at 3660.121 kb on + strand, within ABZR86_RS16205at 3660.160 kb on + strand, within ABZR86_RS16205at 3660.161 kb on - strand, within ABZR86_RS16205at 3660.161 kb on - strand, within ABZR86_RS16205at 3660.280 kb on + strand, within ABZR86_RS16205at 3660.454 kb on + strand, within ABZR86_RS16205at 3660.454 kb on + strand, within ABZR86_RS16205at 3660.455 kb on - strand, within ABZR86_RS16205at 3660.455 kb on - strand, within ABZR86_RS16205at 3660.455 kb on - strand, within ABZR86_RS16205at 3660.589 kb on + strandat 3660.589 kb on + strandat 3660.589 kb on + strandat 3660.590 kb on - strandat 3660.590 kb on - strandat 3660.667 kb on + strandat 3660.668 kb on - strandat 3660.668 kb on - strandat 3660.668 kb on - strandat 3660.701 kb on + strandat 3660.701 kb on + strandat 3660.702 kb on - strandat 3660.748 kb on + strandat 3660.748 kb on + strandat 3660.748 kb on + strandat 3660.748 kb on + strandat 3660.748 kb on + strandat 3660.748 kb on + strandat 3660.749 kb on - strandat 3660.749 kb on - strandat 3660.756 kb on + strandat 3661.162 kb on + strandat 3661.162 kb on + strandat 3661.162 kb on + strandat 3661.163 kb on - strandat 3661.163 kb on - strandat 3661.163 kb on - strandat 3661.163 kb on - strandat 3661.467 kb on + strandat 3661.467 kb on + strandat 3661.494 kb on + strandat 3661.495 kb on - strandat 3661.526 kb on - strandat 3661.593 kb on + strandat 3661.767 kb on + strand, within ABZR86_RS16215at 3661.767 kb on + strand, within ABZR86_RS16215at 3661.767 kb on + strand, within ABZR86_RS16215at 3661.767 kb on + strand, within ABZR86_RS16215at 3661.767 kb on + strand, within ABZR86_RS16215at 3661.767 kb on + strand, within ABZR86_RS16215at 3661.843 kb on + strand, within ABZR86_RS16215at 3661.951 kb on - strand, within ABZR86_RS16215at 3661.951 kb on - strand, within ABZR86_RS16215at 3662.070 kb on + strand, within ABZR86_RS16215at 3662.070 kb on + strand, within ABZR86_RS16215at 3662.070 kb on + strand, within ABZR86_RS16215at 3662.070 kb on + strand, within ABZR86_RS16215at 3662.070 kb on + strand, within ABZR86_RS16215at 3662.070 kb on + strand, within ABZR86_RS16215at 3662.070 kb on + strand, within ABZR86_RS16215at 3662.071 kb on - strand, within ABZR86_RS16215at 3662.071 kb on - strand, within ABZR86_RS16215at 3662.071 kb on - strand, within ABZR86_RS16215at 3662.071 kb on - strand, within ABZR86_RS16215at 3662.071 kb on - strand, within ABZR86_RS16215at 3662.118 kb on + strand, within ABZR86_RS16215at 3662.119 kb on - strand, within ABZR86_RS16215at 3662.119 kb on - strand, within ABZR86_RS16215

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Per-strain Table

Position Strand Gene LocusTag Fraction NAG (C)
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3,659,962 + ABZR86_RS16205 0.21 +0.2
3,659,962 + ABZR86_RS16205 0.21 +0.6
3,659,962 + ABZR86_RS16205 0.21 +0.1
3,659,962 + ABZR86_RS16205 0.21 +1.2
3,659,962 + ABZR86_RS16205 0.21 +1.0
3,659,963 - ABZR86_RS16205 0.21 -2.2
3,659,963 - ABZR86_RS16205 0.21 +0.7
3,659,963 - ABZR86_RS16205 0.21 +0.3
3,659,963 - ABZR86_RS16205 0.21 +1.2
3,659,965 + ABZR86_RS16205 0.22 -0.3
3,659,966 - ABZR86_RS16205 0.22 -0.0
3,660,121 + ABZR86_RS16205 0.39 -0.7
3,660,160 + ABZR86_RS16205 0.43 +0.4
3,660,161 - ABZR86_RS16205 0.43 +0.9
3,660,161 - ABZR86_RS16205 0.43 +0.2
3,660,280 + ABZR86_RS16205 0.57 -0.2
3,660,454 + ABZR86_RS16205 0.76 -0.1
3,660,454 + ABZR86_RS16205 0.76 -0.2
3,660,455 - ABZR86_RS16205 0.76 -0.3
3,660,455 - ABZR86_RS16205 0.76 +0.4
3,660,455 - ABZR86_RS16205 0.76 -0.4
3,660,589 + +0.5
3,660,589 + +0.8
3,660,589 + -0.4
3,660,590 - -0.9
3,660,590 - -0.6
3,660,667 + -0.1
3,660,668 - +0.7
3,660,668 - +1.0
3,660,668 - +0.1
3,660,701 + -0.1
3,660,701 + -0.2
3,660,702 - -0.3
3,660,748 + +0.9
3,660,748 + -0.1
3,660,748 + +0.2
3,660,748 + +0.1
3,660,748 + +0.6
3,660,748 + +1.0
3,660,749 - +0.7
3,660,749 - +0.2
3,660,756 + +1.2
3,661,162 + +0.2
3,661,162 + -0.5
3,661,162 + -0.7
3,661,163 - +1.1
3,661,163 - -0.5
3,661,163 - -0.3
3,661,163 - -1.0
3,661,467 + -0.7
3,661,467 + -0.5
3,661,494 + +0.3
3,661,495 - +1.2
3,661,526 - +0.1
3,661,593 + +0.0
3,661,767 + ABZR86_RS16215 0.17 +1.8
3,661,767 + ABZR86_RS16215 0.17 +0.1
3,661,767 + ABZR86_RS16215 0.17 -0.5
3,661,767 + ABZR86_RS16215 0.17 +1.0
3,661,767 + ABZR86_RS16215 0.17 +0.3
3,661,767 + ABZR86_RS16215 0.17 -0.2
3,661,843 + ABZR86_RS16215 0.21 +0.4
3,661,951 - ABZR86_RS16215 0.25 -0.7
3,661,951 - ABZR86_RS16215 0.25 +0.1
3,662,070 + ABZR86_RS16215 0.30 +0.5
3,662,070 + ABZR86_RS16215 0.30 -0.2
3,662,070 + ABZR86_RS16215 0.30 +0.5
3,662,070 + ABZR86_RS16215 0.30 -0.0
3,662,070 + ABZR86_RS16215 0.30 +0.4
3,662,070 + ABZR86_RS16215 0.30 +0.0
3,662,070 + ABZR86_RS16215 0.30 +2.0
3,662,071 - ABZR86_RS16215 0.30 -0.3
3,662,071 - ABZR86_RS16215 0.30 -0.3
3,662,071 - ABZR86_RS16215 0.30 +1.4
3,662,071 - ABZR86_RS16215 0.30 -0.1
3,662,071 - ABZR86_RS16215 0.30 +0.9
3,662,118 + ABZR86_RS16215 0.32 +1.9
3,662,119 - ABZR86_RS16215 0.32 +0.2
3,662,119 - ABZR86_RS16215 0.32 -0.2

Or see this region's nucleotide sequence