Strain Fitness in Dyella japonica UNC79MFTsu3.2 around ABZR86_RS15585

Experiment: NAG (C)

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntABZR86_RS15580 and ABZR86_RS15585 are separated by 235 nucleotidesABZR86_RS15585 and ABZR86_RS15590 are separated by 106 nucleotidesABZR86_RS15590 and ABZR86_RS15595 are separated by 5 nucleotides ABZR86_RS15580: ABZR86_RS15580 - biosynthetic arginine decarboxylase, at 3,505,717 to 3,507,606 _RS15580 ABZR86_RS15585: ABZR86_RS15585 - 3-hydroxybutyrate dehydrogenase, at 3,507,842 to 3,508,630 _RS15585 ABZR86_RS15590: ABZR86_RS15590 - acetoacetate decarboxylase, at 3,508,737 to 3,509,489 _RS15590 ABZR86_RS15595: ABZR86_RS15595 - patatin-like phospholipase family protein, at 3,509,495 to 3,510,673 _RS15595 Position (kb) 3507 3508 3509Strain fitness (log2 ratio) -2 -1 0 1 2at 3507.655 kb on + strandat 3507.710 kb on - strandat 3507.841 kb on + strandat 3507.841 kb on + strandat 3507.920 kb on + strandat 3507.920 kb on + strandat 3507.921 kb on - strand, within ABZR86_RS15585at 3508.232 kb on + strand, within ABZR86_RS15585at 3508.232 kb on + strand, within ABZR86_RS15585at 3508.232 kb on + strand, within ABZR86_RS15585at 3508.232 kb on + strand, within ABZR86_RS15585at 3508.232 kb on + strand, within ABZR86_RS15585at 3508.232 kb on + strand, within ABZR86_RS15585at 3508.232 kb on + strand, within ABZR86_RS15585at 3508.232 kb on + strand, within ABZR86_RS15585at 3508.232 kb on + strand, within ABZR86_RS15585at 3508.232 kb on + strand, within ABZR86_RS15585at 3508.232 kb on + strand, within ABZR86_RS15585at 3508.232 kb on + strand, within ABZR86_RS15585at 3508.232 kb on + strand, within ABZR86_RS15585at 3508.232 kb on + strand, within ABZR86_RS15585at 3508.232 kb on + strand, within ABZR86_RS15585at 3508.232 kb on + strand, within ABZR86_RS15585at 3508.232 kb on + strand, within ABZR86_RS15585at 3508.232 kb on + strand, within ABZR86_RS15585at 3508.232 kb on + strand, within ABZR86_RS15585at 3508.232 kb on + strand, within ABZR86_RS15585at 3508.232 kb on + strand, within ABZR86_RS15585at 3508.233 kb on - strand, within ABZR86_RS15585at 3508.233 kb on - strand, within ABZR86_RS15585at 3508.233 kb on - strand, within ABZR86_RS15585at 3508.233 kb on - strand, within ABZR86_RS15585at 3508.233 kb on - strand, within ABZR86_RS15585at 3508.233 kb on - strand, within ABZR86_RS15585at 3508.233 kb on - strand, within ABZR86_RS15585at 3508.233 kb on - strand, within ABZR86_RS15585at 3508.233 kb on - strand, within ABZR86_RS15585at 3508.233 kb on - strand, within ABZR86_RS15585at 3508.233 kb on - strand, within ABZR86_RS15585at 3508.233 kb on - strand, within ABZR86_RS15585at 3508.233 kb on - strand, within ABZR86_RS15585at 3508.233 kb on - strand, within ABZR86_RS15585at 3508.233 kb on - strand, within ABZR86_RS15585at 3508.233 kb on - strand, within ABZR86_RS15585at 3508.233 kb on - strand, within ABZR86_RS15585at 3508.233 kb on - strand, within ABZR86_RS15585at 3508.233 kb on - strand, within ABZR86_RS15585at 3508.233 kb on - strand, within ABZR86_RS15585at 3508.233 kb on - strand, within ABZR86_RS15585at 3508.233 kb on - strand, within ABZR86_RS15585at 3508.233 kb on - strand, within ABZR86_RS15585at 3508.233 kb on - strand, within ABZR86_RS15585at 3508.233 kb on - strand, within ABZR86_RS15585at 3508.233 kb on - strand, within ABZR86_RS15585at 3508.233 kb on - strand, within ABZR86_RS15585at 3508.262 kb on + strand, within ABZR86_RS15585at 3508.262 kb on + strand, within ABZR86_RS15585at 3508.262 kb on + strand, within ABZR86_RS15585at 3508.262 kb on + strand, within ABZR86_RS15585at 3508.262 kb on + strand, within ABZR86_RS15585at 3508.262 kb on + strand, within ABZR86_RS15585at 3508.262 kb on + strand, within ABZR86_RS15585at 3508.262 kb on + strand, within ABZR86_RS15585at 3508.262 kb on + strand, within ABZR86_RS15585at 3508.262 kb on + strand, within ABZR86_RS15585at 3508.263 kb on - strand, within ABZR86_RS15585at 3508.263 kb on - strand, within ABZR86_RS15585at 3508.263 kb on - strand, within ABZR86_RS15585at 3508.263 kb on - strand, within ABZR86_RS15585at 3508.263 kb on - strand, within ABZR86_RS15585at 3508.263 kb on - strand, within ABZR86_RS15585at 3508.263 kb on - strand, within ABZR86_RS15585at 3508.263 kb on - strand, within ABZR86_RS15585at 3508.263 kb on - strand, within ABZR86_RS15585at 3508.263 kb on - strand, within ABZR86_RS15585at 3508.310 kb on + strand, within ABZR86_RS15585at 3508.310 kb on + strand, within ABZR86_RS15585at 3508.310 kb on + strand, within ABZR86_RS15585at 3508.311 kb on - strand, within ABZR86_RS15585at 3508.311 kb on - strand, within ABZR86_RS15585at 3508.315 kb on + strand, within ABZR86_RS15585at 3508.619 kb on + strandat 3508.619 kb on + strandat 3508.619 kb on + strandat 3508.619 kb on + strandat 3508.619 kb on + strandat 3508.620 kb on - strandat 3508.620 kb on - strandat 3508.620 kb on - strandat 3508.620 kb on - strandat 3508.620 kb on - strandat 3508.620 kb on - strandat 3508.628 kb on + strandat 3508.628 kb on + strandat 3508.628 kb on + strandat 3508.628 kb on + strandat 3508.629 kb on - strandat 3508.629 kb on - strandat 3508.629 kb on - strandat 3508.629 kb on - strandat 3508.629 kb on - strandat 3508.846 kb on - strand, within ABZR86_RS15590at 3508.846 kb on - strand, within ABZR86_RS15590at 3508.846 kb on - strand, within ABZR86_RS15590at 3508.917 kb on + strand, within ABZR86_RS15590at 3508.917 kb on + strand, within ABZR86_RS15590at 3508.917 kb on + strand, within ABZR86_RS15590at 3508.918 kb on - strand, within ABZR86_RS15590at 3508.918 kb on - strand, within ABZR86_RS15590at 3508.959 kb on + strand, within ABZR86_RS15590at 3508.959 kb on + strand, within ABZR86_RS15590at 3508.959 kb on + strand, within ABZR86_RS15590at 3508.960 kb on - strand, within ABZR86_RS15590at 3508.960 kb on - strand, within ABZR86_RS15590at 3509.013 kb on + strand, within ABZR86_RS15590at 3509.014 kb on - strand, within ABZR86_RS15590at 3509.014 kb on - strand, within ABZR86_RS15590at 3509.014 kb on - strand, within ABZR86_RS15590at 3509.028 kb on + strand, within ABZR86_RS15590at 3509.028 kb on + strand, within ABZR86_RS15590at 3509.028 kb on + strand, within ABZR86_RS15590at 3509.028 kb on + strand, within ABZR86_RS15590at 3509.028 kb on + strand, within ABZR86_RS15590at 3509.028 kb on + strand, within ABZR86_RS15590at 3509.029 kb on - strand, within ABZR86_RS15590at 3509.029 kb on - strand, within ABZR86_RS15590at 3509.029 kb on - strand, within ABZR86_RS15590at 3509.120 kb on + strand, within ABZR86_RS15590at 3509.121 kb on - strand, within ABZR86_RS15590at 3509.121 kb on - strand, within ABZR86_RS15590at 3509.121 kb on - strand, within ABZR86_RS15590at 3509.142 kb on + strand, within ABZR86_RS15590at 3509.142 kb on + strand, within ABZR86_RS15590at 3509.143 kb on - strand, within ABZR86_RS15590at 3509.304 kb on + strand, within ABZR86_RS15590at 3509.304 kb on + strand, within ABZR86_RS15590at 3509.304 kb on + strand, within ABZR86_RS15590at 3509.304 kb on + strand, within ABZR86_RS15590at 3509.305 kb on - strand, within ABZR86_RS15590at 3509.305 kb on - strand, within ABZR86_RS15590at 3509.305 kb on - strand, within ABZR86_RS15590at 3509.305 kb on - strand, within ABZR86_RS15590at 3509.305 kb on - strand, within ABZR86_RS15590at 3509.305 kb on - strand, within ABZR86_RS15590at 3509.472 kb on + strandat 3509.472 kb on + strandat 3509.472 kb on + strandat 3509.472 kb on + strandat 3509.473 kb on - strandat 3509.473 kb on - strandat 3509.473 kb on - strandat 3509.473 kb on - strandat 3509.473 kb on - strandat 3509.473 kb on - strandat 3509.473 kb on - strandat 3509.473 kb on - strandat 3509.473 kb on - strandat 3509.473 kb on - strandat 3509.555 kb on + strandat 3509.555 kb on + strandat 3509.556 kb on - strandat 3509.556 kb on - strandat 3509.556 kb on - strandat 3509.556 kb on - strandat 3509.556 kb on - strandat 3509.603 kb on + strandat 3509.603 kb on + strandat 3509.603 kb on + strandat 3509.618 kb on + strand, within ABZR86_RS15595at 3509.618 kb on + strand, within ABZR86_RS15595at 3509.618 kb on + strand, within ABZR86_RS15595at 3509.619 kb on - strand, within ABZR86_RS15595at 3509.619 kb on - strand, within ABZR86_RS15595at 3509.619 kb on - strand, within ABZR86_RS15595at 3509.619 kb on - strand, within ABZR86_RS15595at 3509.619 kb on - strand, within ABZR86_RS15595

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Per-strain Table

Position Strand Gene LocusTag Fraction NAG (C)
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3,507,655 + -2.2
3,507,710 - +0.3
3,507,841 + -0.4
3,507,841 + +0.6
3,507,920 + +0.6
3,507,920 + -0.1
3,507,921 - ABZR86_RS15585 0.10 +0.4
3,508,232 + ABZR86_RS15585 0.49 +0.4
3,508,232 + ABZR86_RS15585 0.49 +0.5
3,508,232 + ABZR86_RS15585 0.49 +0.3
3,508,232 + ABZR86_RS15585 0.49 +1.3
3,508,232 + ABZR86_RS15585 0.49 -0.1
3,508,232 + ABZR86_RS15585 0.49 +0.5
3,508,232 + ABZR86_RS15585 0.49 -0.6
3,508,232 + ABZR86_RS15585 0.49 -0.6
3,508,232 + ABZR86_RS15585 0.49 +0.2
3,508,232 + ABZR86_RS15585 0.49 -2.2
3,508,232 + ABZR86_RS15585 0.49 +0.2
3,508,232 + ABZR86_RS15585 0.49 -0.2
3,508,232 + ABZR86_RS15585 0.49 +0.3
3,508,232 + ABZR86_RS15585 0.49 -0.2
3,508,232 + ABZR86_RS15585 0.49 +0.9
3,508,232 + ABZR86_RS15585 0.49 +0.9
3,508,232 + ABZR86_RS15585 0.49 +0.2
3,508,232 + ABZR86_RS15585 0.49 +0.6
3,508,232 + ABZR86_RS15585 0.49 +0.8
3,508,232 + ABZR86_RS15585 0.49 +1.3
3,508,232 + ABZR86_RS15585 0.49 -1.0
3,508,233 - ABZR86_RS15585 0.50 +0.4
3,508,233 - ABZR86_RS15585 0.50 -0.3
3,508,233 - ABZR86_RS15585 0.50 -0.4
3,508,233 - ABZR86_RS15585 0.50 +0.7
3,508,233 - ABZR86_RS15585 0.50 +0.4
3,508,233 - ABZR86_RS15585 0.50 -0.2
3,508,233 - ABZR86_RS15585 0.50 +0.3
3,508,233 - ABZR86_RS15585 0.50 +0.4
3,508,233 - ABZR86_RS15585 0.50 +0.2
3,508,233 - ABZR86_RS15585 0.50 +0.1
3,508,233 - ABZR86_RS15585 0.50 -0.5
3,508,233 - ABZR86_RS15585 0.50 +0.2
3,508,233 - ABZR86_RS15585 0.50 -0.3
3,508,233 - ABZR86_RS15585 0.50 +1.0
3,508,233 - ABZR86_RS15585 0.50 +1.7
3,508,233 - ABZR86_RS15585 0.50 -0.8
3,508,233 - ABZR86_RS15585 0.50 +0.1
3,508,233 - ABZR86_RS15585 0.50 -0.2
3,508,233 - ABZR86_RS15585 0.50 +0.5
3,508,233 - ABZR86_RS15585 0.50 +0.7
3,508,233 - ABZR86_RS15585 0.50 +1.3
3,508,233 - ABZR86_RS15585 0.50 -0.4
3,508,233 - ABZR86_RS15585 0.50 -0.3
3,508,233 - ABZR86_RS15585 0.50 +0.3
3,508,233 - ABZR86_RS15585 0.50 +0.6
3,508,233 - ABZR86_RS15585 0.50 +0.2
3,508,233 - ABZR86_RS15585 0.50 +0.5
3,508,262 + ABZR86_RS15585 0.53 +0.2
3,508,262 + ABZR86_RS15585 0.53 +0.2
3,508,262 + ABZR86_RS15585 0.53 -0.2
3,508,262 + ABZR86_RS15585 0.53 -0.7
3,508,262 + ABZR86_RS15585 0.53 -0.3
3,508,262 + ABZR86_RS15585 0.53 +0.4
3,508,262 + ABZR86_RS15585 0.53 -0.2
3,508,262 + ABZR86_RS15585 0.53 -0.4
3,508,262 + ABZR86_RS15585 0.53 +0.7
3,508,262 + ABZR86_RS15585 0.53 +0.1
3,508,263 - ABZR86_RS15585 0.53 -0.5
3,508,263 - ABZR86_RS15585 0.53 -0.6
3,508,263 - ABZR86_RS15585 0.53 -0.2
3,508,263 - ABZR86_RS15585 0.53 +0.1
3,508,263 - ABZR86_RS15585 0.53 +0.3
3,508,263 - ABZR86_RS15585 0.53 +0.6
3,508,263 - ABZR86_RS15585 0.53 -0.3
3,508,263 - ABZR86_RS15585 0.53 -0.8
3,508,263 - ABZR86_RS15585 0.53 +0.3
3,508,263 - ABZR86_RS15585 0.53 +0.5
3,508,310 + ABZR86_RS15585 0.59 -0.3
3,508,310 + ABZR86_RS15585 0.59 -0.3
3,508,310 + ABZR86_RS15585 0.59 -0.6
3,508,311 - ABZR86_RS15585 0.59 +0.2
3,508,311 - ABZR86_RS15585 0.59 -0.8
3,508,315 + ABZR86_RS15585 0.60 +0.8
3,508,619 + -0.0
3,508,619 + +0.4
3,508,619 + -0.5
3,508,619 + +0.1
3,508,619 + +0.4
3,508,620 - -0.1
3,508,620 - +0.9
3,508,620 - +0.1
3,508,620 - -1.0
3,508,620 - -0.3
3,508,620 - -0.1
3,508,628 + -0.8
3,508,628 + +0.9
3,508,628 + +0.1
3,508,628 + -1.4
3,508,629 - +0.4
3,508,629 - -0.3
3,508,629 - +0.0
3,508,629 - -0.4
3,508,629 - -1.0
3,508,846 - ABZR86_RS15590 0.14 -0.5
3,508,846 - ABZR86_RS15590 0.14 +1.0
3,508,846 - ABZR86_RS15590 0.14 -0.4
3,508,917 + ABZR86_RS15590 0.24 +0.2
3,508,917 + ABZR86_RS15590 0.24 -0.5
3,508,917 + ABZR86_RS15590 0.24 +0.6
3,508,918 - ABZR86_RS15590 0.24 +0.2
3,508,918 - ABZR86_RS15590 0.24 -0.0
3,508,959 + ABZR86_RS15590 0.29 +0.1
3,508,959 + ABZR86_RS15590 0.29 +0.5
3,508,959 + ABZR86_RS15590 0.29 +0.4
3,508,960 - ABZR86_RS15590 0.30 -0.2
3,508,960 - ABZR86_RS15590 0.30 +1.6
3,509,013 + ABZR86_RS15590 0.37 -0.1
3,509,014 - ABZR86_RS15590 0.37 +0.1
3,509,014 - ABZR86_RS15590 0.37 -0.0
3,509,014 - ABZR86_RS15590 0.37 +0.2
3,509,028 + ABZR86_RS15590 0.39 +0.2
3,509,028 + ABZR86_RS15590 0.39 +0.4
3,509,028 + ABZR86_RS15590 0.39 -0.4
3,509,028 + ABZR86_RS15590 0.39 +2.4
3,509,028 + ABZR86_RS15590 0.39 -0.6
3,509,028 + ABZR86_RS15590 0.39 +0.2
3,509,029 - ABZR86_RS15590 0.39 +0.2
3,509,029 - ABZR86_RS15590 0.39 +0.5
3,509,029 - ABZR86_RS15590 0.39 +0.3
3,509,120 + ABZR86_RS15590 0.51 -0.1
3,509,121 - ABZR86_RS15590 0.51 -1.2
3,509,121 - ABZR86_RS15590 0.51 +0.4
3,509,121 - ABZR86_RS15590 0.51 +0.3
3,509,142 + ABZR86_RS15590 0.54 -0.0
3,509,142 + ABZR86_RS15590 0.54 +0.5
3,509,143 - ABZR86_RS15590 0.54 +0.7
3,509,304 + ABZR86_RS15590 0.75 -0.2
3,509,304 + ABZR86_RS15590 0.75 -0.2
3,509,304 + ABZR86_RS15590 0.75 -0.4
3,509,304 + ABZR86_RS15590 0.75 +0.4
3,509,305 - ABZR86_RS15590 0.75 -0.5
3,509,305 - ABZR86_RS15590 0.75 -0.1
3,509,305 - ABZR86_RS15590 0.75 -0.1
3,509,305 - ABZR86_RS15590 0.75 +0.9
3,509,305 - ABZR86_RS15590 0.75 -0.5
3,509,305 - ABZR86_RS15590 0.75 +1.3
3,509,472 + +0.4
3,509,472 + -0.7
3,509,472 + -2.5
3,509,472 + +0.3
3,509,473 - -0.4
3,509,473 - -1.2
3,509,473 - -0.2
3,509,473 - +0.9
3,509,473 - -0.4
3,509,473 - +0.1
3,509,473 - -0.2
3,509,473 - -0.3
3,509,473 - +0.4
3,509,473 - -0.1
3,509,555 + -0.5
3,509,555 + +0.0
3,509,556 - -0.7
3,509,556 - +0.0
3,509,556 - -1.0
3,509,556 - +0.1
3,509,556 - +0.5
3,509,603 + +0.1
3,509,603 + +0.0
3,509,603 + -0.0
3,509,618 + ABZR86_RS15595 0.10 -0.5
3,509,618 + ABZR86_RS15595 0.10 +0.1
3,509,618 + ABZR86_RS15595 0.10 -0.2
3,509,619 - ABZR86_RS15595 0.11 +0.4
3,509,619 - ABZR86_RS15595 0.11 +0.0
3,509,619 - ABZR86_RS15595 0.11 +0.2
3,509,619 - ABZR86_RS15595 0.11 +0.1
3,509,619 - ABZR86_RS15595 0.11 -0.6

Or see this region's nucleotide sequence