Experiment: NAG (C)
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt ABZR86_RS08235 and ABZR86_RS08240 overlap by 1 nucleotides ABZR86_RS08240 and ABZR86_RS08245 overlap by 8 nucleotides ABZR86_RS08245 and ABZR86_RS08250 are separated by 49 nucleotides ABZR86_RS08250 and ABZR86_RS08255 are separated by 125 nucleotides
ABZR86_RS08235: ABZR86_RS08235 - phosphate ABC transporter permease subunit PstC, at 1,833,469 to 1,834,485
_RS08235
ABZR86_RS08240: ABZR86_RS08240 - phosphate ABC transporter permease PstA, at 1,834,485 to 1,835,357
_RS08240
ABZR86_RS08245: ABZR86_RS08245 - phosphate ABC transporter ATP-binding protein PstB, at 1,835,350 to 1,836,156
_RS08245
ABZR86_RS08250: ABZR86_RS08250 - phosphate signaling complex protein PhoU, at 1,836,206 to 1,836,940
_RS08250
ABZR86_RS08255: ABZR86_RS08255 - quaternary ammonium compound efflux SMR transporter SugE, at 1,837,066 to 1,837,389
_RS08255
Position (kb)
1835
1836
1837 Strain fitness (log2 ratio)
-4
-3
-2
-1
0
1 at 1836.206 kb on - strand at 1836.206 kb on - strand at 1836.206 kb on - strand at 1836.242 kb on + strand at 1836.242 kb on + strand at 1836.243 kb on - strand at 1836.243 kb on - strand at 1836.665 kb on + strand, within ABZR86_RS08250 at 1836.704 kb on + strand, within ABZR86_RS08250 at 1836.734 kb on + strand, within ABZR86_RS08250 at 1836.735 kb on - strand, within ABZR86_RS08250 at 1836.994 kb on - strand at 1836.994 kb on - strand
Per-strain Table
Position Strand Gene LocusTag Fraction NAG (C) remove 1,836,206 - -2.7 1,836,206 - -2.0 1,836,206 - -2.6 1,836,242 + -1.2 1,836,242 + -3.6 1,836,243 - -3.4 1,836,243 - -3.5 1,836,665 + ABZR86_RS08250 0.62 -2.7 1,836,704 + ABZR86_RS08250 0.68 -4.3 1,836,734 + ABZR86_RS08250 0.72 -2.9 1,836,735 - ABZR86_RS08250 0.72 -1.2 1,836,994 - +0.4 1,836,994 - -0.3
Or see this region's nucleotide sequence