Strain Fitness in Dyella japonica UNC79MFTsu3.2 around ABZR86_RS07900

Experiment: NAG (C)

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntABZR86_RS07895 and ABZR86_RS07900 are separated by 104 nucleotidesABZR86_RS07900 and ABZR86_RS07905 are separated by 48 nucleotidesABZR86_RS07905 and ABZR86_RS07910 are separated by 15 nucleotides ABZR86_RS07895: ABZR86_RS07895 - TonB-dependent receptor, at 1,754,362 to 1,756,362 _RS07895 ABZR86_RS07900: ABZR86_RS07900 - transcriptional repressor, at 1,756,467 to 1,756,949 _RS07900 ABZR86_RS07905: ABZR86_RS07905 - hypothetical protein, at 1,756,998 to 1,757,276 _RS07905 ABZR86_RS07910: ABZR86_RS07910 - glutamate--tRNA ligase, at 1,757,292 to 1,758,692 _RS07910 Position (kb) 1756 1757Strain fitness (log2 ratio) -1 0 1at 1755.800 kb on - strand, within ABZR86_RS07895at 1755.800 kb on - strand, within ABZR86_RS07895at 1755.835 kb on + strand, within ABZR86_RS07895at 1755.836 kb on - strand, within ABZR86_RS07895at 1755.862 kb on + strand, within ABZR86_RS07895at 1755.862 kb on + strand, within ABZR86_RS07895at 1755.863 kb on - strand, within ABZR86_RS07895at 1756.133 kb on - strand, within ABZR86_RS07895at 1756.360 kb on + strandat 1756.360 kb on + strandat 1756.360 kb on + strandat 1756.360 kb on + strandat 1756.360 kb on + strandat 1756.360 kb on + strandat 1756.361 kb on - strandat 1756.361 kb on - strandat 1756.361 kb on - strandat 1756.361 kb on - strandat 1756.780 kb on + strand, within ABZR86_RS07900at 1756.780 kb on + strand, within ABZR86_RS07900at 1756.781 kb on - strand, within ABZR86_RS07900at 1756.974 kb on - strandat 1756.987 kb on + strandat 1756.988 kb on - strand

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Per-strain Table

Position Strand Gene LocusTag Fraction NAG (C)
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1,755,800 - ABZR86_RS07895 0.72 -0.3
1,755,800 - ABZR86_RS07895 0.72 -0.0
1,755,835 + ABZR86_RS07895 0.74 +0.8
1,755,836 - ABZR86_RS07895 0.74 +0.5
1,755,862 + ABZR86_RS07895 0.75 -0.2
1,755,862 + ABZR86_RS07895 0.75 -0.4
1,755,863 - ABZR86_RS07895 0.75 -0.1
1,756,133 - ABZR86_RS07895 0.89 -0.1
1,756,360 + -0.5
1,756,360 + +0.1
1,756,360 + +0.2
1,756,360 + +0.5
1,756,360 + -0.2
1,756,360 + -0.0
1,756,361 - -0.2
1,756,361 - -0.9
1,756,361 - -0.0
1,756,361 - +0.6
1,756,780 + ABZR86_RS07900 0.65 +0.6
1,756,780 + ABZR86_RS07900 0.65 -0.1
1,756,781 - ABZR86_RS07900 0.65 +0.8
1,756,974 - -0.9
1,756,987 + -0.2
1,756,988 - -0.1

Or see this region's nucleotide sequence