Experiment: NAG (C)
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt ABZR86_RS07895 and ABZR86_RS07900 are separated by 104 nucleotides ABZR86_RS07900 and ABZR86_RS07905 are separated by 48 nucleotides ABZR86_RS07905 and ABZR86_RS07910 are separated by 15 nucleotides
ABZR86_RS07895: ABZR86_RS07895 - TonB-dependent receptor, at 1,754,362 to 1,756,362
_RS07895
ABZR86_RS07900: ABZR86_RS07900 - transcriptional repressor, at 1,756,467 to 1,756,949
_RS07900
ABZR86_RS07905: ABZR86_RS07905 - hypothetical protein, at 1,756,998 to 1,757,276
_RS07905
ABZR86_RS07910: ABZR86_RS07910 - glutamate--tRNA ligase, at 1,757,292 to 1,758,692
_RS07910
Position (kb)
1756
1757 Strain fitness (log2 ratio)
-1
0
1 at 1755.800 kb on - strand, within ABZR86_RS07895 at 1755.800 kb on - strand, within ABZR86_RS07895 at 1755.835 kb on + strand, within ABZR86_RS07895 at 1755.836 kb on - strand, within ABZR86_RS07895 at 1755.862 kb on + strand, within ABZR86_RS07895 at 1755.862 kb on + strand, within ABZR86_RS07895 at 1755.863 kb on - strand, within ABZR86_RS07895 at 1756.133 kb on - strand, within ABZR86_RS07895 at 1756.360 kb on + strand at 1756.360 kb on + strand at 1756.360 kb on + strand at 1756.360 kb on + strand at 1756.360 kb on + strand at 1756.360 kb on + strand at 1756.361 kb on - strand at 1756.361 kb on - strand at 1756.361 kb on - strand at 1756.361 kb on - strand at 1756.780 kb on + strand, within ABZR86_RS07900 at 1756.780 kb on + strand, within ABZR86_RS07900 at 1756.781 kb on - strand, within ABZR86_RS07900 at 1756.974 kb on - strand at 1756.987 kb on + strand at 1756.988 kb on - strand
Per-strain Table
Position Strand Gene LocusTag Fraction NAG (C) remove 1,755,800 - ABZR86_RS07895 0.72 -0.3 1,755,800 - ABZR86_RS07895 0.72 -0.0 1,755,835 + ABZR86_RS07895 0.74 +0.8 1,755,836 - ABZR86_RS07895 0.74 +0.5 1,755,862 + ABZR86_RS07895 0.75 -0.2 1,755,862 + ABZR86_RS07895 0.75 -0.4 1,755,863 - ABZR86_RS07895 0.75 -0.1 1,756,133 - ABZR86_RS07895 0.89 -0.1 1,756,360 + -0.5 1,756,360 + +0.1 1,756,360 + +0.2 1,756,360 + +0.5 1,756,360 + -0.2 1,756,360 + -0.0 1,756,361 - -0.2 1,756,361 - -0.9 1,756,361 - -0.0 1,756,361 - +0.6 1,756,780 + ABZR86_RS07900 0.65 +0.6 1,756,780 + ABZR86_RS07900 0.65 -0.1 1,756,781 - ABZR86_RS07900 0.65 +0.8 1,756,974 - -0.9 1,756,987 + -0.2 1,756,988 - -0.1
Or see this region's nucleotide sequence