Strain Fitness in Dyella japonica UNC79MFTsu3.2 around ABZR86_RS03520

Experiment: NAG (C)

Add experiment(s):

Zoom: Pan:

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

download SVG
500 ntABZR86_RS03510 and ABZR86_RS03515 overlap by 4 nucleotidesABZR86_RS03515 and ABZR86_RS03520 are separated by 50 nucleotidesABZR86_RS03520 and ABZR86_RS03525 are separated by 107 nucleotides ABZR86_RS03510: ABZR86_RS03510 - XdhC/CoxI family protein, at 750,691 to 751,785 _RS03510 ABZR86_RS03515: ABZR86_RS03515 - nucleotidyltransferase family protein, at 751,782 to 752,381 _RS03515 ABZR86_RS03520: ABZR86_RS03520 - (2Fe-2S)-binding protein, at 752,432 to 752,869 _RS03520 ABZR86_RS03525: ABZR86_RS03525 - xanthine dehydrogenase family protein molybdopterin-binding subunit, at 752,977 to 755,247 _RS03525 Position (kb) 752 753Strain fitness (log2 ratio) -1 0 1at 751.522 kb on + strand, within ABZR86_RS03510at 751.522 kb on + strand, within ABZR86_RS03510at 751.522 kb on + strand, within ABZR86_RS03510at 751.523 kb on - strand, within ABZR86_RS03510at 751.523 kb on - strand, within ABZR86_RS03510at 751.523 kb on - strand, within ABZR86_RS03510at 751.540 kb on + strand, within ABZR86_RS03510at 751.540 kb on + strand, within ABZR86_RS03510at 751.541 kb on - strand, within ABZR86_RS03510at 751.541 kb on - strand, within ABZR86_RS03510at 751.541 kb on - strand, within ABZR86_RS03510at 751.541 kb on - strand, within ABZR86_RS03510at 751.573 kb on + strand, within ABZR86_RS03510at 751.573 kb on + strand, within ABZR86_RS03510at 751.573 kb on + strand, within ABZR86_RS03510at 751.573 kb on + strand, within ABZR86_RS03510at 751.574 kb on - strand, within ABZR86_RS03510at 751.840 kb on - strandat 752.181 kb on + strand, within ABZR86_RS03515at 752.299 kb on + strand, within ABZR86_RS03515at 752.300 kb on - strand, within ABZR86_RS03515at 752.300 kb on - strand, within ABZR86_RS03515at 752.339 kb on + strandat 752.352 kb on + strandat 752.353 kb on - strandat 752.353 kb on - strandat 752.447 kb on - strandat 752.496 kb on + strand, within ABZR86_RS03520at 752.496 kb on + strand, within ABZR86_RS03520at 752.496 kb on + strand, within ABZR86_RS03520at 752.726 kb on + strand, within ABZR86_RS03520at 752.840 kb on + strandat 752.840 kb on + strandat 752.840 kb on + strandat 752.840 kb on + strandat 752.840 kb on + strandat 752.840 kb on + strandat 752.840 kb on + strandat 752.840 kb on + strandat 752.840 kb on + strandat 752.840 kb on + strandat 752.840 kb on + strandat 752.840 kb on + strandat 752.841 kb on - strandat 752.841 kb on - strandat 752.841 kb on - strandat 752.841 kb on - strandat 752.841 kb on - strandat 752.841 kb on - strandat 752.841 kb on - strandat 752.841 kb on - strandat 752.841 kb on - strandat 753.197 kb on + strandat 753.232 kb on + strand, within ABZR86_RS03525at 753.232 kb on + strand, within ABZR86_RS03525at 753.232 kb on + strand, within ABZR86_RS03525at 753.232 kb on + strand, within ABZR86_RS03525at 753.232 kb on + strand, within ABZR86_RS03525at 753.233 kb on - strand, within ABZR86_RS03525at 753.233 kb on - strand, within ABZR86_RS03525at 753.233 kb on - strand, within ABZR86_RS03525at 753.233 kb on - strand, within ABZR86_RS03525at 753.233 kb on - strand, within ABZR86_RS03525at 753.233 kb on - strand, within ABZR86_RS03525at 753.233 kb on - strand, within ABZR86_RS03525at 753.322 kb on + strand, within ABZR86_RS03525at 753.626 kb on + strand, within ABZR86_RS03525at 753.626 kb on + strand, within ABZR86_RS03525

download strain data

Per-strain Table

Position Strand Gene LocusTag Fraction NAG (C)
remove
751,522 + ABZR86_RS03510 0.76 +0.5
751,522 + ABZR86_RS03510 0.76 -0.5
751,522 + ABZR86_RS03510 0.76 -0.3
751,523 - ABZR86_RS03510 0.76 -0.4
751,523 - ABZR86_RS03510 0.76 -1.1
751,523 - ABZR86_RS03510 0.76 -0.9
751,540 + ABZR86_RS03510 0.78 +0.0
751,540 + ABZR86_RS03510 0.78 +0.2
751,541 - ABZR86_RS03510 0.78 -0.0
751,541 - ABZR86_RS03510 0.78 +0.5
751,541 - ABZR86_RS03510 0.78 +0.6
751,541 - ABZR86_RS03510 0.78 -0.6
751,573 + ABZR86_RS03510 0.81 +0.4
751,573 + ABZR86_RS03510 0.81 +0.4
751,573 + ABZR86_RS03510 0.81 +0.6
751,573 + ABZR86_RS03510 0.81 -0.4
751,574 - ABZR86_RS03510 0.81 +0.6
751,840 - +0.6
752,181 + ABZR86_RS03515 0.67 -0.6
752,299 + ABZR86_RS03515 0.86 -0.4
752,300 - ABZR86_RS03515 0.86 -0.2
752,300 - ABZR86_RS03515 0.86 +0.6
752,339 + +0.6
752,352 + -0.2
752,353 - -0.4
752,353 - -0.3
752,447 - -0.7
752,496 + ABZR86_RS03520 0.15 +0.0
752,496 + ABZR86_RS03520 0.15 -0.2
752,496 + ABZR86_RS03520 0.15 -0.6
752,726 + ABZR86_RS03520 0.67 +0.3
752,840 + +0.4
752,840 + +0.4
752,840 + -0.1
752,840 + +0.6
752,840 + +0.9
752,840 + -0.3
752,840 + +0.6
752,840 + -0.6
752,840 + -1.7
752,840 + -0.8
752,840 + -0.9
752,840 + -0.9
752,841 - -0.4
752,841 - +0.6
752,841 - -0.4
752,841 - -0.1
752,841 - -0.1
752,841 - +0.3
752,841 - -0.3
752,841 - -0.4
752,841 - -0.2
753,197 + +0.3
753,232 + ABZR86_RS03525 0.11 -0.1
753,232 + ABZR86_RS03525 0.11 -0.2
753,232 + ABZR86_RS03525 0.11 -0.2
753,232 + ABZR86_RS03525 0.11 +0.7
753,232 + ABZR86_RS03525 0.11 +0.6
753,233 - ABZR86_RS03525 0.11 +0.5
753,233 - ABZR86_RS03525 0.11 +0.1
753,233 - ABZR86_RS03525 0.11 -1.7
753,233 - ABZR86_RS03525 0.11 +0.5
753,233 - ABZR86_RS03525 0.11 +0.1
753,233 - ABZR86_RS03525 0.11 -0.8
753,233 - ABZR86_RS03525 0.11 -0.8
753,322 + ABZR86_RS03525 0.15 +0.9
753,626 + ABZR86_RS03525 0.29 -0.4
753,626 + ABZR86_RS03525 0.29 +0.5

Or see this region's nucleotide sequence