Experiment: NAG (C)
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt ABZR86_RS02525 and ABZR86_RS02530 overlap by 1 nucleotides ABZR86_RS02530 and ABZR86_RS02535 overlap by 4 nucleotides ABZR86_RS02535 and ABZR86_RS02540 overlap by 4 nucleotides ABZR86_RS02540 and ABZR86_RS02545 overlap by 4 nucleotides ABZR86_RS02545 and ABZR86_RS02550 overlap by 4 nucleotides
ABZR86_RS02525: ABZR86_RS02525 - hypothetical protein, at 517,618 to 518,376
_RS02525
ABZR86_RS02530: ABZR86_RS02530 - hypothetical protein, at 518,376 to 518,795
_RS02530
ABZR86_RS02535: ABZR86_RS02535 - hypothetical protein, at 518,792 to 519,040
_RS02535
ABZR86_RS02540: ABZR86_RS02540 - hypothetical protein, at 519,037 to 519,300
_RS02540
ABZR86_RS02545: ABZR86_RS02545 - Ref family recombination enhancement nuclease, at 519,297 to 519,848
_RS02545
ABZR86_RS02550: ABZR86_RS02550 - hypothetical protein, at 519,845 to 520,516
_RS02550
Position (kb) 518
519
520 Strain fitness (log2 ratio) -5
-4
-3
-2
-1
0
1
2 at 517.792 kb on + strand, within ABZR86_RS02525 at 517.792 kb on + strand, within ABZR86_RS02525 at 517.793 kb on - strand, within ABZR86_RS02525 at 517.981 kb on - strand, within ABZR86_RS02525 at 518.016 kb on - strand, within ABZR86_RS02525 at 518.016 kb on - strand, within ABZR86_RS02525 at 518.132 kb on - strand, within ABZR86_RS02525 at 518.132 kb on - strand, within ABZR86_RS02525 at 518.165 kb on - strand, within ABZR86_RS02525 at 518.165 kb on - strand, within ABZR86_RS02525 at 518.375 kb on - strand at 518.394 kb on + strand at 518.487 kb on + strand, within ABZR86_RS02530 at 518.488 kb on - strand, within ABZR86_RS02530 at 518.488 kb on - strand, within ABZR86_RS02530 at 518.535 kb on + strand, within ABZR86_RS02530 at 518.535 kb on + strand, within ABZR86_RS02530 at 518.604 kb on + strand, within ABZR86_RS02530 at 518.605 kb on - strand, within ABZR86_RS02530 at 518.605 kb on - strand, within ABZR86_RS02530 at 518.626 kb on - strand, within ABZR86_RS02530 at 518.787 kb on - strand at 518.982 kb on + strand, within ABZR86_RS02535 at 518.982 kb on + strand, within ABZR86_RS02535 at 518.982 kb on + strand, within ABZR86_RS02535 at 518.982 kb on + strand, within ABZR86_RS02535 at 518.982 kb on + strand, within ABZR86_RS02535 at 518.983 kb on - strand, within ABZR86_RS02535 at 519.101 kb on + strand, within ABZR86_RS02540 at 519.139 kb on + strand, within ABZR86_RS02540 at 519.139 kb on + strand, within ABZR86_RS02540 at 519.139 kb on + strand, within ABZR86_RS02540 at 519.139 kb on + strand, within ABZR86_RS02540 at 519.139 kb on + strand, within ABZR86_RS02540 at 519.140 kb on - strand, within ABZR86_RS02540 at 519.140 kb on - strand, within ABZR86_RS02540 at 519.140 kb on - strand, within ABZR86_RS02540 at 519.140 kb on - strand, within ABZR86_RS02540 at 519.150 kb on + strand, within ABZR86_RS02540 at 519.151 kb on - strand, within ABZR86_RS02540 at 519.253 kb on + strand, within ABZR86_RS02540 at 519.254 kb on - strand, within ABZR86_RS02540 at 519.254 kb on - strand, within ABZR86_RS02540 at 519.254 kb on - strand, within ABZR86_RS02540 at 519.254 kb on - strand, within ABZR86_RS02540 at 519.254 kb on - strand, within ABZR86_RS02540 at 519.366 kb on - strand, within ABZR86_RS02545 at 519.509 kb on + strand, within ABZR86_RS02545 at 519.558 kb on + strand, within ABZR86_RS02545 at 519.705 kb on + strand, within ABZR86_RS02545 at 519.706 kb on - strand, within ABZR86_RS02545 at 519.717 kb on + strand, within ABZR86_RS02545 at 519.717 kb on + strand, within ABZR86_RS02545 at 519.718 kb on - strand, within ABZR86_RS02545 at 519.750 kb on + strand, within ABZR86_RS02545 at 519.750 kb on + strand, within ABZR86_RS02545 at 519.750 kb on + strand, within ABZR86_RS02545 at 519.750 kb on + strand, within ABZR86_RS02545 at 519.751 kb on - strand, within ABZR86_RS02545 at 519.751 kb on - strand, within ABZR86_RS02545 at 519.778 kb on - strand, within ABZR86_RS02545 at 519.791 kb on + strand, within ABZR86_RS02545 at 519.791 kb on + strand, within ABZR86_RS02545 at 519.792 kb on - strand, within ABZR86_RS02545 at 519.793 kb on + strand at 519.794 kb on - strand at 519.794 kb on - strand at 519.794 kb on - strand at 519.894 kb on - strand at 519.894 kb on - strand
Per-strain Table
Position Strand Gene LocusTag Fraction NAG (C) remove 517,792 + ABZR86_RS02525 0.23 +1.3 517,792 + ABZR86_RS02525 0.23 -2.3 517,793 - ABZR86_RS02525 0.23 -0.3 517,981 - ABZR86_RS02525 0.48 +0.6 518,016 - ABZR86_RS02525 0.52 +0.9 518,016 - ABZR86_RS02525 0.52 -0.5 518,132 - ABZR86_RS02525 0.68 +0.0 518,132 - ABZR86_RS02525 0.68 +1.0 518,165 - ABZR86_RS02525 0.72 +0.4 518,165 - ABZR86_RS02525 0.72 +0.3 518,375 - +0.5 518,394 + -3.3 518,487 + ABZR86_RS02530 0.26 -4.8 518,488 - ABZR86_RS02530 0.27 +0.1 518,488 - ABZR86_RS02530 0.27 -0.3 518,535 + ABZR86_RS02530 0.38 -3.9 518,535 + ABZR86_RS02530 0.38 -3.6 518,604 + ABZR86_RS02530 0.54 -2.8 518,605 - ABZR86_RS02530 0.55 +0.8 518,605 - ABZR86_RS02530 0.55 -1.1 518,626 - ABZR86_RS02530 0.60 -0.5 518,787 - +0.4 518,982 + ABZR86_RS02535 0.76 -1.9 518,982 + ABZR86_RS02535 0.76 +0.5 518,982 + ABZR86_RS02535 0.76 -0.3 518,982 + ABZR86_RS02535 0.76 +0.2 518,982 + ABZR86_RS02535 0.76 -0.1 518,983 - ABZR86_RS02535 0.77 +0.1 519,101 + ABZR86_RS02540 0.24 +1.7 519,139 + ABZR86_RS02540 0.39 -0.4 519,139 + ABZR86_RS02540 0.39 +0.2 519,139 + ABZR86_RS02540 0.39 -0.2 519,139 + ABZR86_RS02540 0.39 -1.3 519,139 + ABZR86_RS02540 0.39 +0.1 519,140 - ABZR86_RS02540 0.39 +0.5 519,140 - ABZR86_RS02540 0.39 +0.7 519,140 - ABZR86_RS02540 0.39 +1.2 519,140 - ABZR86_RS02540 0.39 -0.2 519,150 + ABZR86_RS02540 0.43 -0.2 519,151 - ABZR86_RS02540 0.43 -1.8 519,253 + ABZR86_RS02540 0.82 +0.7 519,254 - ABZR86_RS02540 0.82 +0.8 519,254 - ABZR86_RS02540 0.82 +2.1 519,254 - ABZR86_RS02540 0.82 +1.7 519,254 - ABZR86_RS02540 0.82 +0.1 519,254 - ABZR86_RS02540 0.82 -0.0 519,366 - ABZR86_RS02545 0.12 +0.5 519,509 + ABZR86_RS02545 0.38 -0.6 519,558 + ABZR86_RS02545 0.47 -1.7 519,705 + ABZR86_RS02545 0.74 -4.3 519,706 - ABZR86_RS02545 0.74 +0.7 519,717 + ABZR86_RS02545 0.76 -3.6 519,717 + ABZR86_RS02545 0.76 -3.7 519,718 - ABZR86_RS02545 0.76 +0.1 519,750 + ABZR86_RS02545 0.82 -2.7 519,750 + ABZR86_RS02545 0.82 -3.3 519,750 + ABZR86_RS02545 0.82 -1.3 519,750 + ABZR86_RS02545 0.82 -2.1 519,751 - ABZR86_RS02545 0.82 +0.1 519,751 - ABZR86_RS02545 0.82 -0.3 519,778 - ABZR86_RS02545 0.87 +0.2 519,791 + ABZR86_RS02545 0.89 +0.0 519,791 + ABZR86_RS02545 0.89 -1.3 519,792 - ABZR86_RS02545 0.90 -0.0 519,793 + -1.2 519,794 - +0.1 519,794 - +0.8 519,794 - +0.7 519,894 - +0.7 519,894 - -1.5
Or see this region's nucleotide sequence