Experiment: NAG (C)
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt ABZR86_RS01810 and ABZR86_RS01815 are separated by 61 nucleotides ABZR86_RS01815 and ABZR86_RS01820 are separated by 9 nucleotides ABZR86_RS01820 and ABZR86_RS01825 are separated by 222 nucleotides
ABZR86_RS01810: ABZR86_RS01810 - DNA translocase FtsK, at 391,362 to 393,692
_RS01810
ABZR86_RS01815: ABZR86_RS01815 - outer membrane lipoprotein chaperone LolA, at 393,754 to 394,413
_RS01815
ABZR86_RS01820: ABZR86_RS01820 - YoaK family protein, at 394,423 to 395,088
_RS01820
ABZR86_RS01825: ABZR86_RS01825 - replication-associated recombination protein A, at 395,311 to 396,642
_RS01825
Position (kb) 394
395
396 Strain fitness (log2 ratio) -4
-3
-2
-1
0
1 at 393.690 kb on + strand at 393.690 kb on + strand at 393.690 kb on + strand at 393.690 kb on + strand at 393.691 kb on - strand at 394.819 kb on + strand, within ABZR86_RS01820 at 394.819 kb on + strand, within ABZR86_RS01820 at 394.820 kb on - strand, within ABZR86_RS01820 at 394.820 kb on - strand, within ABZR86_RS01820 at 394.879 kb on + strand, within ABZR86_RS01820 at 394.880 kb on - strand, within ABZR86_RS01820 at 394.880 kb on - strand, within ABZR86_RS01820 at 394.880 kb on - strand, within ABZR86_RS01820 at 394.880 kb on - strand, within ABZR86_RS01820 at 395.053 kb on + strand at 395.062 kb on + strand at 395.062 kb on + strand at 395.063 kb on - strand at 395.063 kb on - strand at 395.063 kb on - strand at 395.063 kb on - strand at 395.087 kb on - strand at 395.138 kb on + strand at 395.205 kb on - strand at 395.299 kb on - strand at 395.745 kb on + strand, within ABZR86_RS01825 at 396.039 kb on + strand, within ABZR86_RS01825 at 396.073 kb on + strand, within ABZR86_RS01825 at 396.073 kb on + strand, within ABZR86_RS01825 at 396.074 kb on - strand, within ABZR86_RS01825 at 396.074 kb on - strand, within ABZR86_RS01825 at 396.074 kb on - strand, within ABZR86_RS01825 at 396.074 kb on - strand, within ABZR86_RS01825
Per-strain Table
Position Strand Gene LocusTag Fraction NAG (C) remove 393,690 + +1.6 393,690 + +0.5 393,690 + +1.5 393,690 + +0.5 393,691 - -0.8 394,819 + ABZR86_RS01820 0.59 +1.0 394,819 + ABZR86_RS01820 0.59 -0.0 394,820 - ABZR86_RS01820 0.60 +0.8 394,820 - ABZR86_RS01820 0.60 +0.9 394,879 + ABZR86_RS01820 0.68 +0.7 394,880 - ABZR86_RS01820 0.69 +0.2 394,880 - ABZR86_RS01820 0.69 +0.5 394,880 - ABZR86_RS01820 0.69 +0.9 394,880 - ABZR86_RS01820 0.69 +0.6 395,053 + +0.9 395,062 + +1.3 395,062 + -0.0 395,063 - -0.4 395,063 - +0.6 395,063 - +0.8 395,063 - +0.5 395,087 - +0.0 395,138 + -0.4 395,205 - +0.9 395,299 - +0.9 395,745 + ABZR86_RS01825 0.33 -1.2 396,039 + ABZR86_RS01825 0.55 -3.1 396,073 + ABZR86_RS01825 0.57 -1.3 396,073 + ABZR86_RS01825 0.57 -4.4 396,074 - ABZR86_RS01825 0.57 -3.4 396,074 - ABZR86_RS01825 0.57 -1.6 396,074 - ABZR86_RS01825 0.57 -0.3 396,074 - ABZR86_RS01825 0.57 -0.9
Or see this region's nucleotide sequence